MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:824.3 nTPM
HPA:824.3 nTPM
GTEx:769.8 nTPM
FANTOM5:208.5 Scaled Tags Per Million
Pig:231.6 nTPM
Mouse:281.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 824.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 811.1
1870 Female, age 42, unknown 837.8
2411 Female, age 72, unknown 836.7
2666 Male, age 74, left hemisphere 813.3
1833 Male, age 53, unknown 809.1
1827 Male, age 72, unknown 808.6
1830 Male, age 51, unknown 805.4
2828 Female, age 72, unknown 803.4
2019 Male, age 18, unknown 802.3
2586 Male, age 75, left hemisphere 800.8
2219 Male, age 76, both hemispheres 793.5
Dorsal raphe nucleus
nTPM: 816.9
2298 Female, age 72, unknown 841.4
2016 Female, age 72, unknown 822.3
2750 Male, age 76, both hemispheres 812.6
1828 Male, age 53, unknown 808.8
2047 Male, age 72, unknown 799.4
Inferior colliculus
nTPM: 810.6
2097 Female, age 72, unknown 823.8
1890 Male, age 53, unknown 822.0
1848 Female, age 42, unknown 805.6
2849 Male, age 72, unknown 790.9
Median raphe nucleus
nTPM: 796.2
2220 Male, age 76, midline 796.2
Pedunculopontine tegmental nucleus
nTPM: 821.8
2334 Male, age 80, both hemispheres 833.2
1921 Female, age 85, both hemispheres 817.2
2338 Male, age 61, both hemispheres 815.0
Periaquaductal grey, anterior
nTPM: 820.4
2502 Female, age 75, unknown 848.8
1947 Male, age 18, unknown 812.7
1795 Male, age 51, unknown 799.6
Periaquaductal grey, dorsal
nTPM: 809.7
1831 Male, age 72, unknown 817.8
1840 Male, age 53, unknown 807.9
2464 Female, age 72, unknown 806.9
2850 Male, age 76, both hemispheres 806.3
Periaquaductal grey, lateral
nTPM: 807.0
2053 Male, age 18, unknown 833.7
2140 Male, age 76, both hemispheres 796.3
2272 Male, age 74, both hemispheres 791.0
Pretectal area
nTPM: 809.1
2316 Male, age 76, right hemisphere 834.9
2224 Female, age 72, unknown 817.9
1815 Male, age 53, unknown 815.5
1817 Female, age 42, unknown 814.3
1816 Male, age 51, unknown 811.2
2007 Male, age 72, unknown 808.7
1944 Female, age 72, unknown 807.7
2407 Male, age 75, both hemispheres 802.5
2825 Male, age 18, unknown 801.1
2667 Female, age 75, unknown 794.2
2273 Male, age 74, both hemispheres 792.4
Red nucleus
nTPM: 822.6
1821 Female, age 72, unknown 854.5
2503 Female, age 72, unknown 847.7
2769 Male, age 72, unknown 830.5
1904 Male, age 53, unknown 830.3
1865 Male, age 51, unknown 829.6
2584 Male, age 75, left hemisphere 822.5
2227 Male, age 72, unknown 819.6
2725 Female, age 75, unknown 811.4
2785 Male, age 18, unknown 810.5
2823 Male, age 76, right hemisphere 805.5
1954 Female, age 42, unknown 805.4
2588 Male, age 74, left hemisphere 803.3
Substantia nigra
nTPM: 824.3
1851 Male, age 51, unknown 856.1
2409 Female, age 72, unknown 847.0
2241 Male, age 72, unknown 835.5
2699 Male, age 18, unknown 833.9
2590 Female, age 75, unknown 829.0
1916 Female, age 42, unknown 818.1
1889 Female, age 72, unknown 818.0
2665 Male, age 74, both hemispheres 817.6
1941 Male, age 53, unknown 806.4
2583 Male, age 75, right hemisphere 781.1
Superior colliculus
nTPM: 820.2
2587 Male, age 74, left hemisphere 848.3
1913 Female, age 42, unknown 839.5
1995 Male, age 72, unknown 835.6
2261 Male, age 18, unknown 815.8
1839 Male, age 51, unknown 814.0
2668 Female, age 75, unknown 813.6
1796 Male, age 53, unknown 811.5
1895 Male, age 76, right hemisphere 811.2
2664 Male, age 75, both hemispheres 806.6
2087 Female, age 72, unknown 806.0
Ventral tegmental area
nTPM: 823.8
2410 Female, age 72, unknown 837.4
1915 Female, age 42, unknown 836.8
2021 Male, age 53, unknown 831.6
2223 Female, age 72, unknown 825.6
1942 Male, age 51, unknown 815.4
2218 Male, age 76, both hemispheres 796.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 769.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 769.8
Samples: 139

Max nTPM: 2209.3
Min nTPM: 281.7
Std nTPM: 311.9
Median nTPM: 694.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2209.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2059.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1738.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1702.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1408.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1398.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1382.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1360.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1275.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1249.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1211.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 208.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 208.5
FF:10158-103A5 76 years, female 208.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 231.6
Pig sample Sample description nTPM
Midbrain
nTPM: 223.1
Samples: 4

Max nTPM: 262.4
Min nTPM: 183.5
Sample A Female 262.4
Sample B Female 209.5
Sample C Male 237.0
Sample D Male 183.5
Periaqueductal gray
nTPM: 191.8
Samples: 3

Max nTPM: 222.6
Min nTPM: 171.0
Sample B Female 171.0
Sample C Male 222.6
Sample D Male 181.9
Substantia nigra
nTPM: 221.0
Samples: 4

Max nTPM: 231.9
Min nTPM: 210.1
Sample A Female 226.9
Sample B Female 215.2
Sample C Male 210.1
Sample D Male 231.9
Superior colliculi
nTPM: 231.7
Samples: 4

Max nTPM: 261.6
Min nTPM: 209.2
Sample A Female 230.9
Sample B Female 209.2
Sample C Male 261.6
Sample D Male 225.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 281.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 281.2
Samples: 4

Max nTPM: 326.4
Min nTPM: 224.7
Sample A Male 326.4
Sample B Male 293.7
Sample C Female 224.7
Sample D Female 280.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68301867 Antisense, RP_041130_02_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.