We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS13
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RPS13
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:817.7 nTPM
HPA:765.1 nTPM
GTEx:817.7 nTPM
FANTOM5:503.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA005985
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 765.1
overview
Male, age 65
Small intestine sample 232
nTPM: 939.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 749
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 685.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 686.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 817.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 817.7
Samples: 187

Max nTPM: 1798.6
Min nTPM: 374.8
Std nTPM: 235.7
Median nTPM: 800.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1798.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1669.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1563.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1539.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1361.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1312.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1285.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1267.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1249.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1236.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1208.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1196.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 1158.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1154.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1149.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1139.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1133.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1125.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1113.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1107.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1105.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1099.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1092.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1084.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1074.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1073.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1066.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1052.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1043.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1020.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1006.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1005.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1000.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 997.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 992.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 985.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 983.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 980.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 978.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 967.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 964.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 963.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 956.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 955.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 950.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 949.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 936.7
GTEX-1192X-2526-SM-59868 50-59 years, male 936.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 931.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 926.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 921.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 920.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 908.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 907.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 907.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 906.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 903.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 902.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 901.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 894.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 890.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 889.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 885.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 882.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 877.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 869.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 865.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 863.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 855.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 849.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 848.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 844.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 843.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 842.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 841.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 840.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 838.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 835.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 835.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 835.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 829.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 827.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 826.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 818.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 818.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 817.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 817.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 815.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 812.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 811.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 811.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 810.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 802.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 800.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 798.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 797.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 796.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 795.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 790.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 788.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 783.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 782.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 777.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 773.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 768.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 762.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 755.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 753.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 746.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 745.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 735.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 730.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 727.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 722.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 721.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 721.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 720.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 720.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 719.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 719.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 717.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 711.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 706.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 702.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 698.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 697.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 694.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 692.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 690.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 687.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 684.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 683.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 681.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 678.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 673.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 669.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 668.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 657.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 654.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 652.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 649.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 645.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 643.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 642.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 641.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 636.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 635.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 635.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 634.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 622.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 614.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 612.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 609.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 605.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 593.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 592.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 591.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 590.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 589.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 587.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 587.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 587.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 569.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 566.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 561.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 553.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 552.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 551.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 548.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 546.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 539.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 539.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 532.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 523.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 518.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 516.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 491.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 487.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 471.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 465.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 462.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 457.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 444.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 423.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 419.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 418.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 374.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 503.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 503.8
FF:10024-101D6 15,40,85 years, mixed 503.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.