MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:72.0 nTPM
HPA:72.0 nTPM
GTEx:63.7 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:58.0 nTPM
Mouse:107.9 nTPM
Allen mouse:19.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.0
2019 Male, age 18, unknown 72.2
1827 Male, age 72, unknown 71.5
2586 Male, age 75, left hemisphere 70.5
2666 Male, age 74, left hemisphere 69.0
2828 Female, age 72, unknown 67.4
2411 Female, age 72, unknown 65.7
2219 Male, age 76, both hemispheres 62.8
1870 Female, age 42, unknown 61.1
1830 Male, age 51, unknown 59.8
1833 Male, age 53, unknown 59.8
Dorsal raphe nucleus
nTPM: 62.2
2298 Female, age 72, unknown 66.1
1828 Male, age 53, unknown 64.6
2750 Male, age 76, both hemispheres 61.9
2047 Male, age 72, unknown 59.4
2016 Female, age 72, unknown 59.0
Inferior colliculus
nTPM: 61.7
2097 Female, age 72, unknown 67.3
1890 Male, age 53, unknown 62.1
1848 Female, age 42, unknown 59.5
2849 Male, age 72, unknown 57.8
Median raphe nucleus
nTPM: 63.8
2220 Male, age 76, midline 63.8
Pedunculopontine tegmental nucleus
nTPM: 63.1
2334 Male, age 80, both hemispheres 65.8
1921 Female, age 85, both hemispheres 65.2
2338 Male, age 61, both hemispheres 58.4
Periaquaductal grey, anterior
nTPM: 67.4
2502 Female, age 75, unknown 68.6
1795 Male, age 51, unknown 68.4
1947 Male, age 18, unknown 65.3
Periaquaductal grey, dorsal
nTPM: 59.2
1831 Male, age 72, unknown 63.2
2464 Female, age 72, unknown 58.4
2850 Male, age 76, both hemispheres 57.8
1840 Male, age 53, unknown 57.2
Periaquaductal grey, lateral
nTPM: 60.1
2272 Male, age 74, both hemispheres 62.6
2053 Male, age 18, unknown 60.4
2140 Male, age 76, both hemispheres 57.3
Pretectal area
nTPM: 72.0
1816 Male, age 51, unknown 87.3
2007 Male, age 72, unknown 83.3
1944 Female, age 72, unknown 83.2
1817 Female, age 42, unknown 80.9
1815 Male, age 53, unknown 76.5
2667 Female, age 75, unknown 73.6
2273 Male, age 74, both hemispheres 63.9
2407 Male, age 75, both hemispheres 62.4
2825 Male, age 18, unknown 61.7
2224 Female, age 72, unknown 61.3
2316 Male, age 76, right hemisphere 58.0
Red nucleus
nTPM: 64.8
2785 Male, age 18, unknown 70.8
1821 Female, age 72, unknown 69.2
2725 Female, age 75, unknown 67.0
2823 Male, age 76, right hemisphere 64.3
2588 Male, age 74, left hemisphere 64.2
1865 Male, age 51, unknown 63.9
2584 Male, age 75, left hemisphere 63.9
1904 Male, age 53, unknown 63.5
1954 Female, age 42, unknown 63.3
2503 Female, age 72, unknown 63.1
2227 Male, age 72, unknown 62.2
2769 Male, age 72, unknown 62.0
Substantia nigra
nTPM: 69.4
1916 Female, age 42, unknown 79.8
1889 Female, age 72, unknown 75.6
1941 Male, age 53, unknown 73.3
1851 Male, age 51, unknown 71.8
2409 Female, age 72, unknown 68.2
2665 Male, age 74, both hemispheres 67.5
2241 Male, age 72, unknown 66.6
2583 Male, age 75, right hemisphere 65.1
2699 Male, age 18, unknown 63.6
2590 Female, age 75, unknown 63.0
Superior colliculus
nTPM: 66.2
2087 Female, age 72, unknown 77.4
1796 Male, age 53, unknown 70.4
2261 Male, age 18, unknown 70.1
2664 Male, age 75, both hemispheres 67.1
2668 Female, age 75, unknown 66.0
2587 Male, age 74, left hemisphere 63.6
1895 Male, age 76, right hemisphere 62.7
1995 Male, age 72, unknown 62.1
1913 Female, age 42, unknown 61.9
1839 Male, age 51, unknown 60.9
Ventral tegmental area
nTPM: 65.9
2410 Female, age 72, unknown 72.9
1915 Female, age 42, unknown 69.2
2218 Male, age 76, both hemispheres 69.1
1942 Male, age 51, unknown 63.0
2223 Female, age 72, unknown 60.8
2021 Male, age 53, unknown 60.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.7
Samples: 139

Max nTPM: 144.8
Min nTPM: 32.2
Std nTPM: 19.1
Median nTPM: 60.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 126.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 125.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 124.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 121.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 102.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 102.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 96.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 92.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 91.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 91.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.0
Pig sample Sample description nTPM
Midbrain
nTPM: 49.9
Samples: 4

Max nTPM: 63.2
Min nTPM: 42.1
Sample A Female 42.6
Sample B Female 42.1
Sample C Male 63.2
Sample D Male 51.7
Periaqueductal gray
nTPM: 39.1
Samples: 3

Max nTPM: 45.9
Min nTPM: 34.6
Sample B Female 36.7
Sample C Male 45.9
Sample D Male 34.6
Substantia nigra
nTPM: 46.4
Samples: 4

Max nTPM: 60.4
Min nTPM: 29.6
Sample A Female 60.4
Sample B Female 36.5
Sample C Male 59.1
Sample D Male 29.6
Superior colliculi
nTPM: 58.1
Samples: 4

Max nTPM: 64.9
Min nTPM: 52.6
Sample A Female 62.0
Sample B Female 52.6
Sample C Male 64.9
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 107.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.9
Samples: 4

Max nTPM: 117.2
Min nTPM: 93.7
Sample A Male 114.2
Sample B Male 106.3
Sample C Female 93.7
Sample D Female 117.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.9
512762 Antisense, RP_040809_02_C12, Mouse strain C57BL/6J (56 days, male) 19.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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