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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:67.3 nTPM
HPA:67.3 nTPM
GTEx:47.1 nTPM
FANTOM5:34.5 Scaled Tags Per Million
Pig:37.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 67.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 65.9
2565 Male, age 75, midline 72.2
1981 Female, age 72, midline 67.9
2194 Female, age 79, both hemispheres 67.6
2816 Male, age 47, midline 62.5
2048 Male, age 55, midline 59.1
Cervical spinal cord, dorsal horn
nTPM: 63.9
2173 Female, age 72, unknown 69.2
2069 Male, age 47, both hemispheres 64.9
2721 Male, age 90, both hemispheres 63.6
2297 Male, age 75, both hemispheres 63.0
2296 Male, age 66, both hemispheres 62.9
1877 Male, age 55, unknown 59.6
Cervical spinal cord, ventral horn
nTPM: 67.3
2480 Male, age 75, both hemispheres 71.0
2295 Male, age 66, both hemispheres 69.3
2809 Male, age 90, both hemispheres 66.4
2820 Female, age 79, both hemispheres 66.3
2068 Male, age 55, unknown 65.3
2098 Female, age 72, unknown 65.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 47.1
Samples: 159

Max nTPM: 73.8
Min nTPM: 29.1
Std nTPM: 7.9
Median nTPM: 46.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 73.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 69.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 65.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 64.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 64.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 63.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 59.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 58.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 58.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 58.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 57.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 57.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 56.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 56.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 56.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 56.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 56.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 55.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 55.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 55.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 55.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 55.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 55.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 55.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 54.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 54.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 54.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 54.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 54.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 53.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 53.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 53.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 53.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 53.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 53.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 52.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 52.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 52.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 52.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 51.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 51.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 51.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 51.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 51.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 51.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 51.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 51.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 51.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 50.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 50.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 50.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 50.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 49.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 49.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 49.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 49.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 49.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 49.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 49.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 49.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 49.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 48.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 48.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 48.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 48.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 48.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 48.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 47.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 47.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 47.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 47.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 47.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 47.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 47.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 46.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 46.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 46.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 46.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 46.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 46.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 46.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 46.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 45.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 45.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 45.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 45.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 45.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 45.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 45.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 45.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 45.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 45.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 44.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 44.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 44.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 44.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 44.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 43.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 43.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 43.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 43.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 43.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 43.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 43.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 43.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 43.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 43.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 43.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 42.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 42.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 42.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 42.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 42.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 41.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 41.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 41.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 41.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 41.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 41.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 41.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 40.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 40.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 40.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 40.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 40.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 40.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 40.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 40.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 39.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 39.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 39.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 39.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 39.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 39.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 38.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 38.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 37.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 37.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 36.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 36.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 36.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 35.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 35.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 35.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 34.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 34.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 34.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 33.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 32.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 31.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 31.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 30.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 29.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 29.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 34.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 34.5
FF:10181-103D1 60 years, female 37.0
FF:10159-103A6 76 years, female 32.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 35.7
Samples: 4

Max nTPM: 40.1
Min nTPM: 30.5
Sample A Female 40.1
Sample B Female 30.5
Sample C Male 32.8
Sample D Male 39.3
Ventral spinal cord
nTPM: 37.5
Samples: 4

Max nTPM: 41.2
Min nTPM: 33.7
Sample A Female 38.1
Sample B Female 37.0
Sample C Male 41.2
Sample D Male 33.7

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