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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:509.1 nTPM
HPA:509.1 nTPM
GTEx:662.4 nTPM
FANTOM5:489.7 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 509.1
Sample id Sample description nTPM
Amygdala
nTPM: 509.1
2814 Male, age 76, right hemisphere 558.0
2695 Female, age 67, right hemisphere 538.8
2514 Male, age 75, right hemisphere 514.7
1987 Female, age 91, left hemisphere 492.5
2517 Female, age 94, left hemisphere 441.4
Basal amygdala
nTPM: 468.4
2609 Male, age 75, right hemisphere 549.6
2243 Female, age 91, right hemisphere 484.0
1955 Male, age 76, both hemispheres 480.4
2110 Male, age 80, left hemisphere 464.0
2685 Female, age 94, left hemisphere 428.5
2827 Female, age 67, right hemisphere 403.8
Central amygdala
nTPM: 482.9
1905 Male, age 76, both hemispheres 548.0
2515 Male, age 75, right hemisphere 494.9
2701 Female, age 91, right hemisphere 483.5
2239 Male, age 80, left hemisphere 466.3
2826 Female, age 94, left hemisphere 421.7
Corticomedial amygdala
nTPM: 478.4
2428 Male, age 75, right hemisphere 528.8
2829 Male, age 80, left hemisphere 497.3
2242 Female, age 91, right hemisphere 491.0
2429 Female, age 94, left hemisphere 486.6
2240 Male, age 76, both hemispheres 467.9
2535 Female, age 67, right hemisphere 398.5
Lateral amygdala
nTPM: 458.7
1883 Male, age 76, both hemispheres 536.3
2516 Male, age 75, right hemisphere 523.8
2255 Female, age 91, right hemisphere 445.5
2256 Male, age 80, left hemisphere 431.5
2534 Female, age 94, left hemisphere 413.0
2830 Female, age 67, right hemisphere 402.0
Stria terminalis, bed nucleus
nTPM: 474.8
1974 Female, age 91, both hemispheres 487.0
2201 Male, age 74, unknown 479.7
2486 Female, age 94, both hemispheres 457.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 662.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 662.4
Samples: 152

Max nTPM: 1502.6
Min nTPM: 139.5
Std nTPM: 221.5
Median nTPM: 644.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1502.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1321.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1248.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1194.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1181.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1173.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1146.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1111.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1103.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1085.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1062.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1058.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 966.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 963.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 909.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 907.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 904.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 882.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 873.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 872.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 871.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 867.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 867.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 852.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 846.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 845.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 842.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 838.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 833.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 831.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 821.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 820.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 820.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 815.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 798.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 794.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 773.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 773.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 770.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 770.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 767.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 753.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 747.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 745.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 742.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 736.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 732.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 731.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 730.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 718.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 714.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 709.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 708.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 707.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 705.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 700.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 699.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 694.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 693.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 683.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 680.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 673.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 672.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 669.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 669.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 668.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 667.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 665.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 663.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 662.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 658.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 658.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 650.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 648.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 646.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 644.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 643.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 641.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 635.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 633.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 630.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 630.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 627.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 624.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 624.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 623.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 622.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 613.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 610.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 609.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 606.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 606.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 603.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 596.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 596.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 594.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 579.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 575.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 575.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 571.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 564.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 561.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 554.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 547.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 539.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 534.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 531.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 531.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 527.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 524.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 524.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 519.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 511.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 503.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 500.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 496.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 494.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 485.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 485.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 479.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 471.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 469.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 468.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 454.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 453.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 452.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 451.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 446.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 444.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 437.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 430.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 429.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 423.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 422.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 420.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 417.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 412.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 409.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 408.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 385.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 385.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 383.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 381.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 380.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 370.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 369.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 327.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 323.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 320.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 290.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 267.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 139.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 489.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 489.7
FF:10151-102I7 76 years, female 489.7

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