MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:575.4 nTPM
HPA:575.4 nTPM
GTEx:834.2 nTPM
FANTOM5:453.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 575.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 501.9
2019 Male, age 18, unknown 530.2
2411 Female, age 72, unknown 528.4
1827 Male, age 72, unknown 524.0
2828 Female, age 72, unknown 523.0
2219 Male, age 76, both hemispheres 504.4
1870 Female, age 42, unknown 503.8
1833 Male, age 53, unknown 500.6
1830 Male, age 51, unknown 473.3
2666 Male, age 74, left hemisphere 466.8
2586 Male, age 75, left hemisphere 464.6
Dorsal raphe nucleus
nTPM: 545.2
1828 Male, age 53, unknown 582.8
2047 Male, age 72, unknown 568.9
2298 Female, age 72, unknown 553.1
2016 Female, age 72, unknown 524.5
2750 Male, age 76, both hemispheres 496.9
Inferior colliculus
nTPM: 561.7
1890 Male, age 53, unknown 585.9
2097 Female, age 72, unknown 568.8
1848 Female, age 42, unknown 563.3
2849 Male, age 72, unknown 529.0
Median raphe nucleus
nTPM: 516.0
2220 Male, age 76, midline 516.0
Pedunculopontine tegmental nucleus
nTPM: 512.8
2334 Male, age 80, both hemispheres 528.6
1921 Female, age 85, both hemispheres 523.2
2338 Male, age 61, both hemispheres 486.5
Periaquaductal grey, anterior
nTPM: 486.7
1947 Male, age 18, unknown 496.7
2502 Female, age 75, unknown 483.9
1795 Male, age 51, unknown 479.4
Periaquaductal grey, dorsal
nTPM: 516.6
1840 Male, age 53, unknown 545.8
2464 Female, age 72, unknown 511.7
2850 Male, age 76, both hemispheres 509.6
1831 Male, age 72, unknown 499.4
Periaquaductal grey, lateral
nTPM: 492.0
2053 Male, age 18, unknown 500.5
2140 Male, age 76, both hemispheres 489.4
2272 Male, age 74, both hemispheres 486.2
Pretectal area
nTPM: 534.3
2667 Female, age 75, unknown 593.8
1817 Female, age 42, unknown 585.5
1944 Female, age 72, unknown 580.2
1816 Male, age 51, unknown 568.1
2007 Male, age 72, unknown 546.1
1815 Male, age 53, unknown 524.4
2273 Male, age 74, both hemispheres 521.5
2224 Female, age 72, unknown 506.7
2825 Male, age 18, unknown 493.2
2316 Male, age 76, right hemisphere 489.8
2407 Male, age 75, both hemispheres 467.9
Red nucleus
nTPM: 529.0
1821 Female, age 72, unknown 610.1
2503 Female, age 72, unknown 566.0
1954 Female, age 42, unknown 545.3
2823 Male, age 76, right hemisphere 541.4
2227 Male, age 72, unknown 524.9
2769 Male, age 72, unknown 524.3
1865 Male, age 51, unknown 521.7
2725 Female, age 75, unknown 520.3
2588 Male, age 74, left hemisphere 519.3
1904 Male, age 53, unknown 515.9
2785 Male, age 18, unknown 505.5
2584 Male, age 75, left hemisphere 453.8
Substantia nigra
nTPM: 575.4
1916 Female, age 42, unknown 672.2
2241 Male, age 72, unknown 612.5
1851 Male, age 51, unknown 605.7
2699 Male, age 18, unknown 594.0
1889 Female, age 72, unknown 588.6
2665 Male, age 74, both hemispheres 575.3
1941 Male, age 53, unknown 558.5
2409 Female, age 72, unknown 539.0
2590 Female, age 75, unknown 526.6
2583 Male, age 75, right hemisphere 481.5
Superior colliculus
nTPM: 503.6
1895 Male, age 76, right hemisphere 550.2
2087 Female, age 72, unknown 549.8
2587 Male, age 74, left hemisphere 525.8
1796 Male, age 53, unknown 503.9
1839 Male, age 51, unknown 501.7
2668 Female, age 75, unknown 496.7
2261 Male, age 18, unknown 492.4
2664 Male, age 75, both hemispheres 481.8
1913 Female, age 42, unknown 468.3
1995 Male, age 72, unknown 465.8
Ventral tegmental area
nTPM: 540.3
2410 Female, age 72, unknown 593.4
1915 Female, age 42, unknown 590.6
2218 Male, age 76, both hemispheres 559.6
1942 Male, age 51, unknown 520.8
2223 Female, age 72, unknown 496.4
2021 Male, age 53, unknown 481.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 834.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 834.2
Samples: 139

Max nTPM: 1781.3
Min nTPM: 330.9
Std nTPM: 261.3
Median nTPM: 798.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1781.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1642.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1516.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1410.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1388.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1378.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1297.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1280.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1276.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1250.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1238.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 453.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 453.6
FF:10158-103A5 76 years, female 453.6

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The Human Protein Atlas

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