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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:537.8 nTPM
HPA:537.8 nTPM
GTEx:476.3 nTPM
FANTOM5:508.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 537.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 514.6
1981 Female, age 72, midline 569.3
2048 Male, age 55, midline 542.4
2194 Female, age 79, both hemispheres 517.9
2816 Male, age 47, midline 481.9
2565 Male, age 75, midline 461.8
Cervical spinal cord, dorsal horn
nTPM: 537.8
2173 Female, age 72, unknown 588.2
2296 Male, age 66, both hemispheres 550.1
2069 Male, age 47, both hemispheres 533.0
2721 Male, age 90, both hemispheres 530.6
1877 Male, age 55, unknown 523.2
2297 Male, age 75, both hemispheres 501.9
Cervical spinal cord, ventral horn
nTPM: 532.4
2098 Female, age 72, unknown 577.9
2068 Male, age 55, unknown 543.2
2809 Male, age 90, both hemispheres 534.4
2295 Male, age 66, both hemispheres 519.4
2480 Male, age 75, both hemispheres 514.7
2820 Female, age 79, both hemispheres 504.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 476.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 476.3
Samples: 159

Max nTPM: 785.4
Min nTPM: 272.6
Std nTPM: 98.1
Median nTPM: 458.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 785.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 780.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 776.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 757.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 739.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 710.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 697.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 667.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 642.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 642.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 641.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 628.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 627.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 620.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 604.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 604.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 602.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 599.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 598.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 598.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 596.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 592.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 588.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 579.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 573.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 572.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 568.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 566.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 554.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 550.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 548.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 545.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 536.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 534.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 533.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 531.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 527.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 524.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 522.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 522.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 516.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 516.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 515.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 512.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 511.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 511.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 506.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 506.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 506.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 503.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 502.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 501.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 494.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 494.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 493.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 493.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 493.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 490.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 489.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 488.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 487.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 486.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 486.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 486.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 485.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 484.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 482.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 482.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 482.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 480.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 476.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 475.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 473.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 472.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 471.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 470.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 468.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 464.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 459.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 458.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 458.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 457.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 457.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 456.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 456.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 455.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 453.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 451.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 451.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 449.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 449.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 448.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 446.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 446.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 445.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 443.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 443.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 440.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 436.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 434.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 433.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 432.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 431.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 429.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 426.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 425.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 425.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 425.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 421.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 421.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 420.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 419.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 417.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 414.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 411.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 410.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 408.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 408.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 407.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 407.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 407.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 405.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 404.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 403.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 402.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 402.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 399.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 398.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 396.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 394.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 394.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 391.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 390.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 388.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 387.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 387.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 386.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 379.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 379.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 377.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 369.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 368.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 362.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 362.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 361.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 360.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 358.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 357.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 357.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 353.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 349.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 342.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 339.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 332.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 331.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 326.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 316.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 276.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 272.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 508.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 508.2
FF:10159-103A6 76 years, female 531.4
FF:10181-103D1 60 years, female 485.1

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