MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:75.0 nTPM
HPA:75.0 nTPM
GTEx:58.5 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:55.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.2
2019 Male, age 18, unknown 75.8
1870 Female, age 42, unknown 75.0
2411 Female, age 72, unknown 74.5
1827 Male, age 72, unknown 74.3
1833 Male, age 53, unknown 74.3
2828 Female, age 72, unknown 72.5
1830 Male, age 51, unknown 72.4
2666 Male, age 74, left hemisphere 72.3
2219 Male, age 76, both hemispheres 71.7
2586 Male, age 75, left hemisphere 68.8
Dorsal raphe nucleus
nTPM: 73.9
2298 Female, age 72, unknown 75.2
1828 Male, age 53, unknown 74.7
2750 Male, age 76, both hemispheres 74.6
2047 Male, age 72, unknown 73.0
2016 Female, age 72, unknown 72.3
Inferior colliculus
nTPM: 74.5
2097 Female, age 72, unknown 76.4
1848 Female, age 42, unknown 74.8
1890 Male, age 53, unknown 73.5
2849 Male, age 72, unknown 73.3
Median raphe nucleus
nTPM: 73.4
2220 Male, age 76, midline 73.4
Pedunculopontine tegmental nucleus
nTPM: 74.9
2334 Male, age 80, both hemispheres 75.3
2338 Male, age 61, both hemispheres 75.1
1921 Female, age 85, both hemispheres 74.4
Periaquaductal grey, anterior
nTPM: 73.3
1947 Male, age 18, unknown 74.7
1795 Male, age 51, unknown 73.6
2502 Female, age 75, unknown 71.7
Periaquaductal grey, dorsal
nTPM: 72.6
2850 Male, age 76, both hemispheres 73.4
2464 Female, age 72, unknown 72.6
1840 Male, age 53, unknown 72.3
1831 Male, age 72, unknown 72.1
Periaquaductal grey, lateral
nTPM: 73.4
2272 Male, age 74, both hemispheres 75.2
2053 Male, age 18, unknown 73.0
2140 Male, age 76, both hemispheres 72.1
Pretectal area
nTPM: 75.0
1817 Female, age 42, unknown 77.1
1816 Male, age 51, unknown 76.8
1944 Female, age 72, unknown 76.5
2667 Female, age 75, unknown 76.4
2273 Male, age 74, both hemispheres 76.1
2007 Male, age 72, unknown 75.5
2224 Female, age 72, unknown 74.9
1815 Male, age 53, unknown 74.3
2407 Male, age 75, both hemispheres 72.9
2316 Male, age 76, right hemisphere 72.3
2825 Male, age 18, unknown 71.8
Red nucleus
nTPM: 74.3
2785 Male, age 18, unknown 76.3
2725 Female, age 75, unknown 76.2
1821 Female, age 72, unknown 75.7
1954 Female, age 42, unknown 75.3
2823 Male, age 76, right hemisphere 75.0
1865 Male, age 51, unknown 74.9
2769 Male, age 72, unknown 74.1
1904 Male, age 53, unknown 73.6
2503 Female, age 72, unknown 73.6
2227 Male, age 72, unknown 73.1
2584 Male, age 75, left hemisphere 72.2
2588 Male, age 74, left hemisphere 71.8
Substantia nigra
nTPM: 74.1
1889 Female, age 72, unknown 77.4
2241 Male, age 72, unknown 76.9
2409 Female, age 72, unknown 75.5
1941 Male, age 53, unknown 75.4
1916 Female, age 42, unknown 74.9
1851 Male, age 51, unknown 73.9
2583 Male, age 75, right hemisphere 72.6
2590 Female, age 75, unknown 72.0
2699 Male, age 18, unknown 71.9
2665 Male, age 74, both hemispheres 70.6
Superior colliculus
nTPM: 73.3
2087 Female, age 72, unknown 75.3
1796 Male, age 53, unknown 74.8
2587 Male, age 74, left hemisphere 74.6
2668 Female, age 75, unknown 73.9
2261 Male, age 18, unknown 73.0
1839 Male, age 51, unknown 72.8
1895 Male, age 76, right hemisphere 72.8
1913 Female, age 42, unknown 72.7
1995 Male, age 72, unknown 72.6
2664 Male, age 75, both hemispheres 70.3
Ventral tegmental area
nTPM: 73.6
2410 Female, age 72, unknown 75.2
2223 Female, age 72, unknown 75.1
2218 Male, age 76, both hemispheres 74.2
1915 Female, age 42, unknown 73.9
1942 Male, age 51, unknown 72.2
2021 Male, age 53, unknown 71.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.5
Samples: 139

Max nTPM: 186.0
Min nTPM: 35.3
Std nTPM: 23.4
Median nTPM: 52.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 186.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 158.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 157.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 155.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 130.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 109.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 99.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 94.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 93.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 89.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 86.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.3
FF:10158-103A5 76 years, female 47.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.4
Pig sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 30.8
Min nTPM: 22.3
Sample A Female 30.8
Sample B Female 28.4
Sample C Male 22.3
Sample D Male 29.4
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 27.5
Min nTPM: 24.9
Sample B Female 24.9
Sample C Male 27.5
Sample D Male 25.3
Substantia nigra
nTPM: 25.4
Samples: 4

Max nTPM: 33.7
Min nTPM: 21.5
Sample A Female 33.7
Sample B Female 21.5
Sample C Male 24.4
Sample D Male 21.8
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 35.5
Min nTPM: 26.0
Sample A Female 35.5
Sample B Female 26.8
Sample C Male 26.0
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 56.5
Min nTPM: 53.8
Sample A Male 55.8
Sample B Male 54.1
Sample C Female 53.8
Sample D Female 56.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68269748 Antisense, RP_041129_02_B02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.