BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:32.5 nTPM
HPA:32.5 nTPM
GTEx:36.6 nTPM
FANTOM5:112.2 Scaled Tags Per Million
Pig:77.1 nTPM
Mouse:117.7 nTPM
Allen mouse:8.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029045Antibody HPA029046
Glial cells LowNot detected
Neuronal cells HighNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.4
1857 Female, age 85, left hemisphere 37.6
2846 Female, age 79, unknown 34.7
1854 Male, age 80, left hemisphere 33.1
2290 Female, age 72, unknown 33.1
1781 Male, age 74, unknown 32.7
2288 Male, age 75, left hemisphere 27.9
2289 Male, age 61, right hemisphere 27.6
2481 Female, age 94, left hemisphere 24.6
Claustrum
nTPM: 28.9
2568 Male, age 61, both hemispheres 34.3
2198 Male, age 80, both hemispheres 31.6
2284 Female, age 91, both hemispheres 31.1
2491 Male, age 75, both hemispheres 30.2
2196 Female, age 79, unknown 29.6
2392 Female, age 94, both hemispheres 27.5
2645 Female, age 72, unknown 27.4
1956 Male, age 74, unknown 26.5
2292 Female, age 85, both hemispheres 22.4
Globus pallidus, externus
nTPM: 20.4
2772 Female, age 79, unknown 23.8
2395 Male, age 75, both hemispheres 22.1
2646 Male, age 61, right hemisphere 21.2
1996 Male, age 80, right hemisphere 18.7
2567 Female, age 72, unknown 16.5
Globus pallidus, internus
nTPM: 19.8
2287 Male, age 75, right hemisphere 24.0
2483 Female, age 94, right hemisphere 23.5
1818 Male, age 74, unknown 21.7
2778 Female, age 91, both hemispheres 19.0
2037 Male, age 80, right hemisphere 18.7
2566 Female, age 72, unknown 16.9
2111 Female, age 85, right hemisphere 14.7
Nucleus accumbens
nTPM: 30.7
1856 Female, age 91, right hemisphere 43.0
1783 Male, age 74, unknown 36.8
1806 Female, age 85, left hemisphere 34.5
2698 Female, age 72, unknown 31.1
2824 Male, age 61, right hemisphere 31.1
2286 Male, age 75, left hemisphere 28.1
2391 Female, age 94, left hemisphere 21.7
2732 Male, age 80, right hemisphere 19.2
Nucleus basalis of Meynert
nTPM: 25.8
2393 Male, age 80, right hemisphere 28.0
2484 Female, age 94, left hemisphere 26.7
2821 Male, age 75, both hemispheres 25.3
2569 Male, age 61, both hemispheres 23.3
Nucleus of the diagonal band
nTPM: 31.5
2775 Male, age 80, right hemisphere 35.1
1812 Female, age 91, both hemispheres 34.2
2029 Male, age 61, right hemisphere 32.1
2195 Female, age 85, both hemispheres 30.9
1979 Male, age 74, unknown 25.2
Olfactory tubercle
nTPM: 32.5
1998 Female, age 91, both hemispheres 36.2
1846 Male, age 80, right hemisphere 33.2
2487 Female, age 94, left hemisphere 32.7
2856 Male, age 75, right hemisphere 27.8
Putamen
nTPM: 30.0
1838 Male, age 80, right hemisphere 35.4
1937 Female, age 91, right hemisphere 33.3
2466 Female, age 79, unknown 32.0
1829 Male, age 74, unknown 31.1
2647 Male, age 75, left hemisphere 28.1
2482 Female, age 94, left hemisphere 25.1
2489 Female, age 72, unknown 24.7
Septal nuclei
nTPM: 28.0
2031 Female, age 72, unknown 32.5
1960 Male, age 74, unknown 32.2
2629 Female, age 94, right hemisphere 31.2
2009 Female, age 91, both hemispheres 29.8
2059 Female, age 85, both hemispheres 26.1
2394 Male, age 61, left hemisphere 22.6
2199 Male, age 80, right hemisphere 21.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.1
Samples: 246

Max nTPM: 69.0
Min nTPM: 13.4
Std nTPM: 9.5
Median nTPM: 34.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 69.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 54.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 54.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 54.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 54.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 53.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 53.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 52.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 52.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.6
Samples: 246

Max nTPM: 61.9
Min nTPM: 12.0
Std nTPM: 9.6
Median nTPM: 37.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 61.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 61.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 59.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 58.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 57.5
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 57.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 55.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 55.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 55.2
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 52.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 51.8
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Brain - Putamen (basal ganglia)
Average nTPM: 33.2
Samples: 205

Max nTPM: 65.6
Min nTPM: 14.3
Std nTPM: 10.1
Median nTPM: 32.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 65.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 60.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 59.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 59.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 58.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 56.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 52.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 52.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 51.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 51.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 48.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.2
FF:10164-103B2 76 years, female 103.2
Globus pallidus
Scaled Tags Per Million: 53.7
FF:10175-103C4 60 years, female 59.9
FF:10161-103A8 76 years, female 47.5
Nucleus accumbens
Scaled Tags Per Million: 112.2
FF:10037-101F1 23-56 years, mixed 112.2
Putamen
Scaled Tags Per Million: 112.0
FF:10176-103C5 60 years, female 112.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 77.1
Pig sample Sample description nTPM
Caudate
nTPM: 75.8
Samples: 4

Max nTPM: 94.9
Min nTPM: 59.5
Sample A Female 59.5
Sample B Female 78.7
Sample C Male 94.9
Sample D Male 70.0
Putamen
nTPM: 77.1
Samples: 4

Max nTPM: 109.8
Min nTPM: 46.3
Sample A Female 46.3
Sample B Female 69.2
Sample C Male 109.8
Sample D Male 83.2
Septum
nTPM: 53.4
Samples: 4

Max nTPM: 62.3
Min nTPM: 42.1
Sample A Female 62.3
Sample B Female 57.3
Sample C Male 51.8
Sample D Male 42.1
Ventral pallidum
nTPM: 63.3
Samples: 4

Max nTPM: 67.9
Min nTPM: 58.3
Sample A Female 67.9
Sample B Female 65.2
Sample C Male 61.6
Sample D Male 58.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 117.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 117.8
Samples: 4

Max nTPM: 128.9
Min nTPM: 102.9
Sample A Male 123.9
Sample B Male 128.9
Sample C Female 102.9
Sample D Female 115.3
Septum
nTPM: 66.2
Samples: 4

Max nTPM: 69.3
Min nTPM: 62.5
Sample A Male 68.0
Sample B Male 62.5
Sample C Female 65.1
Sample D Female 69.3
Ventral forebrain
nTPM: 88.6
Samples: 4

Max nTPM: 91.3
Min nTPM: 84.3
Sample A Male 84.3
Sample B Male 89.0
Sample C Female 91.3
Sample D Female 89.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.6
74059351 Antisense, RP_051214_02_C05, Mouse strain C57BL/6J (56 days, male) 8.6
74047908 Antisense, RP_051214_02_C05, Mouse strain C57BL/6J (56 days, male) 6.1
Pallidum
Expression energy: 4.5
74059351 Antisense, RP_051214_02_C05, Mouse strain C57BL/6J (56 days, male) 4.5
74047908 Antisense, RP_051214_02_C05, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
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