MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.5 nTPM
HPA:64.5 nTPM
GTEx:61.2 nTPM
FANTOM5:283.0 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:299.5 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.8
2411 Female, age 72, unknown 68.1
2019 Male, age 18, unknown 66.8
1870 Female, age 42, unknown 62.2
1827 Male, age 72, unknown 60.3
2666 Male, age 74, left hemisphere 56.3
2586 Male, age 75, left hemisphere 55.9
2828 Female, age 72, unknown 54.9
1833 Male, age 53, unknown 53.3
1830 Male, age 51, unknown 51.0
2219 Male, age 76, both hemispheres 48.9
Dorsal raphe nucleus
nTPM: 63.9
2298 Female, age 72, unknown 77.6
2047 Male, age 72, unknown 64.7
1828 Male, age 53, unknown 60.4
2750 Male, age 76, both hemispheres 59.0
2016 Female, age 72, unknown 57.6
Inferior colliculus
nTPM: 58.4
2097 Female, age 72, unknown 69.4
1890 Male, age 53, unknown 60.0
1848 Female, age 42, unknown 57.5
2849 Male, age 72, unknown 47.0
Median raphe nucleus
nTPM: 60.1
2220 Male, age 76, midline 60.1
Pedunculopontine tegmental nucleus
nTPM: 56.1
2334 Male, age 80, both hemispheres 60.2
1921 Female, age 85, both hemispheres 58.8
2338 Male, age 61, both hemispheres 49.5
Periaquaductal grey, anterior
nTPM: 63.1
1947 Male, age 18, unknown 66.7
2502 Female, age 75, unknown 65.9
1795 Male, age 51, unknown 56.5
Periaquaductal grey, dorsal
nTPM: 53.4
1840 Male, age 53, unknown 57.3
2464 Female, age 72, unknown 56.3
1831 Male, age 72, unknown 53.3
2850 Male, age 76, both hemispheres 46.7
Periaquaductal grey, lateral
nTPM: 52.1
2272 Male, age 74, both hemispheres 56.7
2053 Male, age 18, unknown 55.5
2140 Male, age 76, both hemispheres 44.1
Pretectal area
nTPM: 62.5
2007 Male, age 72, unknown 74.1
1817 Female, age 42, unknown 69.8
1944 Female, age 72, unknown 69.1
1816 Male, age 51, unknown 68.7
1815 Male, age 53, unknown 65.8
2224 Female, age 72, unknown 65.1
2273 Male, age 74, both hemispheres 59.7
2667 Female, age 75, unknown 58.7
2407 Male, age 75, both hemispheres 55.0
2825 Male, age 18, unknown 53.3
2316 Male, age 76, right hemisphere 48.4
Red nucleus
nTPM: 59.5
1821 Female, age 72, unknown 75.6
2503 Female, age 72, unknown 63.7
1865 Male, age 51, unknown 62.7
1954 Female, age 42, unknown 60.8
2785 Male, age 18, unknown 60.7
1904 Male, age 53, unknown 59.9
2227 Male, age 72, unknown 59.8
2769 Male, age 72, unknown 59.6
2725 Female, age 75, unknown 56.1
2584 Male, age 75, left hemisphere 54.2
2823 Male, age 76, right hemisphere 50.8
2588 Male, age 74, left hemisphere 50.6
Substantia nigra
nTPM: 64.5
1916 Female, age 42, unknown 73.3
1851 Male, age 51, unknown 72.6
1889 Female, age 72, unknown 72.1
2409 Female, age 72, unknown 71.1
2241 Male, age 72, unknown 66.6
1941 Male, age 53, unknown 64.8
2583 Male, age 75, right hemisphere 61.5
2590 Female, age 75, unknown 57.4
2665 Male, age 74, both hemispheres 54.0
2699 Male, age 18, unknown 51.2
Superior colliculus
nTPM: 58.3
2668 Female, age 75, unknown 68.7
2261 Male, age 18, unknown 62.1
2587 Male, age 74, left hemisphere 61.2
2087 Female, age 72, unknown 59.5
1913 Female, age 42, unknown 59.0
1796 Male, age 53, unknown 57.3
1895 Male, age 76, right hemisphere 56.1
1839 Male, age 51, unknown 55.1
1995 Male, age 72, unknown 52.9
2664 Male, age 75, both hemispheres 50.6
Ventral tegmental area
nTPM: 60.9
2410 Female, age 72, unknown 73.9
1915 Female, age 42, unknown 60.3
1942 Male, age 51, unknown 60.1
2223 Female, age 72, unknown 57.7
2021 Male, age 53, unknown 57.0
2218 Male, age 76, both hemispheres 56.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.2
Samples: 139

Max nTPM: 100.0
Min nTPM: 34.4
Std nTPM: 11.9
Median nTPM: 59.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 96.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 95.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 84.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 81.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 79.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 79.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 77.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 77.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 283.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.0
FF:10158-103A5 76 years, female 283.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.5
Pig sample Sample description nTPM
Midbrain
nTPM: 79.5
Samples: 4

Max nTPM: 104.0
Min nTPM: 66.1
Sample A Female 66.1
Sample B Female 66.4
Sample C Male 104.0
Sample D Male 81.5
Periaqueductal gray
nTPM: 59.4
Samples: 3

Max nTPM: 65.7
Min nTPM: 55.3
Sample B Female 57.3
Sample C Male 65.7
Sample D Male 55.3
Substantia nigra
nTPM: 69.4
Samples: 4

Max nTPM: 83.0
Min nTPM: 52.5
Sample A Female 83.0
Sample B Female 61.0
Sample C Male 81.1
Sample D Male 52.5
Superior colliculi
nTPM: 78.2
Samples: 4

Max nTPM: 100.5
Min nTPM: 59.2
Sample A Female 80.4
Sample B Female 59.2
Sample C Male 100.5
Sample D Male 72.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 299.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 299.6
Samples: 4

Max nTPM: 315.7
Min nTPM: 284.6
Sample A Male 284.6
Sample B Male 315.7
Sample C Female 306.9
Sample D Female 291.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
70429214 Antisense, RP_050614_01_C04, Mouse strain C57BL/6J (56 days, male) 16.7
81600550 Antisense, RP_080402_04_A11, Mouse strain C57BL/6J (56 days, male) 14.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.