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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1370.4 nTPM
HPA:1370.4 nTPM
FANTOM5:2135.1 Scaled Tags Per Million
Pig:776.0 nTPM
Allen mouse:7.6 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 1370.4
Sample id Sample description nTPM
Area postrema
nTPM: 902.9
2799 Male, age 61, both hemispheres 1363.0
2054 Male, age 76, both hemispheres 749.8
2306 Male, age 80, both hemispheres 596.0
Cuneate nuclei
nTPM: 504.7
2376 Male, age 61, both hemispheres 720.6
2381 Male, age 80, both hemispheres 489.8
2131 Male, age 76, both hemispheres 303.7
Dorsal medullary reticular nucleus
nTPM: 748.8
2373 Male, age 61, both hemispheres 901.9
2040 Female, age 85, both hemispheres 850.8
2088 Male, age 76, both hemispheres 493.8
Dorsal motor vagal complex
nTPM: 625.9
2000 Male, age 74, unknown 822.1
2813 Female, age 72, unknown 736.3
2797 Male, age 61, both hemispheres 702.1
2844 Male, age 55, unknown 665.2
2133 Female, age 91, both hemispheres 655.9
2643 Male, age 74, both hemispheres 564.2
2807 Female, age 85, both hemispheres 505.6
2185 Male, age 76, both hemispheres 355.4
Gigantocellular reticular nuclei, medullary
nTPM: 676.4
2314 Male, age 61, both hemispheres 1225.2
1876 Female, age 85, both hemispheres 760.9
2387 Female, age 91, both hemispheres 683.9
2462 Male, age 74, both hemispheres 560.1
2310 Male, age 80, both hemispheres 546.6
2022 Male, age 76, right hemisphere 281.8
Gigantocellular reticular nuclei, pars
nTPM: 707.4
2084 Female, age 85, both hemispheres 945.2
2336 Male, age 61, both hemispheres 858.0
2330 Male, age 80, both hemispheres 640.2
2706 Male, age 80, both hemispheres 618.3
2168 Male, age 76, both hemispheres 475.2
Inferior olive
nTPM: 1370.4
2085 Female, age 85, both hemispheres 1686.0
2563 Male, age 74, both hemispheres 1449.9
2379 Male, age 80, both hemispheres 1257.3
2178 Male, age 61, both hemispheres 1235.8
2628 Female, age 91, both hemispheres 1222.8
Lateral medullary reticular nucleus
nTPM: 1068.9
2374 Male, age 61, both hemispheres 1432.2
2804 Female, age 91, both hemispheres 1137.0
2190 Female, age 85, both hemispheres 1084.4
2305 Male, age 74, both hemispheres 1014.8
2852 Male, age 80, both hemispheres 947.1
2044 Male, age 76, both hemispheres 798.2
Medial vestibular nucleus
nTPM: 971.3
2801 Male, age 74, both hemispheres 1171.0
2743 Female, age 85, both hemispheres 1134.0
2624 Male, age 61, both hemispheres 1077.5
2134 Male, age 76, both hemispheres 912.2
2093 Male, age 80, both hemispheres 769.3
2803 Female, age 91, both hemispheres 764.0
Motor hypoglossal nucleus
nTPM: 752.1
2461 Male, age 61, both hemispheres 899.4
2125 Female, age 91, both hemispheres 810.2
2277 Male, age 76, both hemispheres 743.5
2182 Male, age 80, both hemispheres 727.2
2132 Female, age 85, both hemispheres 580.2
Nucleus ambiguus
nTPM: 958.5
2071 Male, age 76, both hemispheres 1120.4
2096 Female, age 85, both hemispheres 796.6
Nucleus cuneatus
nTPM: 533.5
2808 Female, age 85, both hemispheres 802.8
2562 Male, age 61, both hemispheres 620.3
2380 Male, age 80, both hemispheres 610.9
2564 Male, age 74, both hemispheres 526.1
2100 Male, age 76, both hemispheres 332.5
2805 Female, age 91, both hemispheres 308.0
Nucleus gracilis
nTPM: 598.0
2627 Male, age 74, both hemispheres 915.7
2382 Male, age 80, both hemispheres 481.9
2299 Female, age 85, both hemispheres 396.3
Nucleus raphe magnus
nTPM: 491.6
2328 Male, age 80, both hemispheres 568.6
2455 Male, age 74, both hemispheres 538.7
2160 Male, age 61, both hemispheres 528.3
2051 Male, age 76, both hemispheres 513.4
2459 Female, age 91, both hemispheres 402.1
2172 Female, age 85, both hemispheres 398.5
Nucleus raphe obscurus
nTPM: 1051.4
2845 Female, age 85, midline 1182.0
2142 Male, age 76, midline 1031.5
2800 Male, age 61, midline 940.6
Nucleus raphe pallidus
nTPM: 883.9
1924 Male, age 61, midline 1030.5
2183 Male, age 80, midline 877.0
2145 Male, age 76, midline 744.1
Nucleus tractus solitarii
nTPM: 650.4
2144 Female, age 91, right hemisphere 801.9
2191 Female, age 85, both hemispheres 783.4
2307 Male, age 80, both hemispheres 570.1
2656 Male, age 76, both hemispheres 446.2
Parvicellular reticular nuclei
nTPM: 620.2
2119 Male, age 80, both hemispheres 845.9
2095 Male, age 76, both hemispheres 715.4
2558 Male, age 74, both hemispheres 299.3
Parvicellular reticular nuclei, medullary
nTPM: 641.0
2189 Female, age 91, both hemispheres 789.2
2091 Female, age 85, both hemispheres 568.9
2181 Male, age 80, left hemisphere 564.9
Peritrigeminal nucleus
nTPM: 1069.2
2067 Female, age 85, both hemispheres 1150.8
2179 Male, age 61, both hemispheres 1038.3
2136 Male, age 76, both hemispheres 1018.4
Prepositus hypoglossal nucleus
nTPM: 1073.4
2855 Female, age 85, right hemisphere 1176.0
2086 Male, age 80, both hemispheres 970.8
Spinal trigeminal nucleus, caudal
nTPM: 627.6
2642 Male, age 74, both hemispheres 764.8
2312 Male, age 61, both hemispheres 752.2
2308 Male, age 80, both hemispheres 627.1
2390 Female, age 91, both hemispheres 604.0
2447 Male, age 76, both hemispheres 389.9
Spinal trigeminal nucleus, interpolar
nTPM: 651.7
2625 Male, age 61, both hemispheres 790.4
2066 Male, age 76, right hemisphere 687.8
2389 Female, age 91, both hemispheres 669.9
2033 Male, age 80, both hemispheres 668.6
2386 Female, age 85, both hemispheres 441.8
Spinal vestibular nucleus
nTPM: 822.9
2806 Female, age 85, both hemispheres 1027.1
2748 Male, age 76, both hemispheres 854.7
2780 Male, age 80, both hemispheres 827.2
2796 Male, age 61, both hemispheres 798.2
2186 Female, age 91, both hemispheres 742.4
2384 Male, age 74, both hemispheres 688.0
Ventral medullary reticular nucleus
nTPM: 892.1
2372 Male, age 61, both hemispheres 1139.0
2060 Male, age 76, both hemispheres 645.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 894.2
2180 Male, age 61, both hemispheres 1021.8
2302 Female, age 91, both hemispheres 1002.5
2741 Female, age 85, both hemispheres 862.9
1986 Male, age 76, both hemispheres 861.5
2118 Male, age 80, both hemispheres 722.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2135.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2135.1
FF:10038-101F2 18-64 years, mixed 2752.7
FF:10155-103A2 76 years, female 2364.9
FF:10174-103C3 60 years, female 1287.7

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 776.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 776.0
Samples: 4

Max nTPM: 825.1
Min nTPM: 651.0
Sample A Female 651.0
Sample B Female 825.1
Sample C Male 809.0
Sample D Male 818.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 7.6
73788443 Antisense, RP_051213_01_B02, Mouse strain C57BL/6J (56 days, male) 8.5
73512200 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 7.2
70429441 Antisense, RP_050614_01_F09, Mouse strain C57BL/6J (56 days, male) 7.1
70918880 Antisense, RP_050712_04_F12, Mouse strain C57BL/6J (56 days, male) 2.6

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by the Knut & Alice Wallenberg Foundation.