MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:145.1 nTPM
HPA:145.1 nTPM
GTEx:165.1 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:62.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 145.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.7
1870 Female, age 42, unknown 145.5
1830 Male, age 51, unknown 139.0
1833 Male, age 53, unknown 139.0
2828 Female, age 72, unknown 137.3
2411 Female, age 72, unknown 137.1
2019 Male, age 18, unknown 135.9
1827 Male, age 72, unknown 133.0
2666 Male, age 74, left hemisphere 130.9
2219 Male, age 76, both hemispheres 129.8
2586 Male, age 75, left hemisphere 129.8
Dorsal raphe nucleus
nTPM: 145.1
2298 Female, age 72, unknown 147.8
2047 Male, age 72, unknown 147.1
2016 Female, age 72, unknown 145.4
1828 Male, age 53, unknown 142.8
2750 Male, age 76, both hemispheres 142.5
Inferior colliculus
nTPM: 138.6
2097 Female, age 72, unknown 140.7
1848 Female, age 42, unknown 140.3
1890 Male, age 53, unknown 138.5
2849 Male, age 72, unknown 134.8
Median raphe nucleus
nTPM: 140.3
2220 Male, age 76, midline 140.3
Pedunculopontine tegmental nucleus
nTPM: 144.7
2338 Male, age 61, both hemispheres 154.3
2334 Male, age 80, both hemispheres 143.6
1921 Female, age 85, both hemispheres 136.2
Periaquaductal grey, anterior
nTPM: 135.1
2502 Female, age 75, unknown 136.0
1947 Male, age 18, unknown 135.4
1795 Male, age 51, unknown 133.9
Periaquaductal grey, dorsal
nTPM: 139.0
2850 Male, age 76, both hemispheres 144.0
1840 Male, age 53, unknown 139.4
2464 Female, age 72, unknown 137.0
1831 Male, age 72, unknown 135.6
Periaquaductal grey, lateral
nTPM: 141.7
2140 Male, age 76, both hemispheres 146.0
2272 Male, age 74, both hemispheres 140.0
2053 Male, age 18, unknown 139.0
Pretectal area
nTPM: 136.0
2273 Male, age 74, both hemispheres 142.5
2224 Female, age 72, unknown 140.4
2316 Male, age 76, right hemisphere 139.9
2667 Female, age 75, unknown 139.1
1817 Female, age 42, unknown 137.0
2825 Male, age 18, unknown 137.0
1815 Male, age 53, unknown 133.0
2407 Male, age 75, both hemispheres 133.0
1944 Female, age 72, unknown 132.4
2007 Male, age 72, unknown 132.2
1816 Male, age 51, unknown 129.8
Red nucleus
nTPM: 142.4
1954 Female, age 42, unknown 152.6
1821 Female, age 72, unknown 150.6
1865 Male, age 51, unknown 145.8
1904 Male, age 53, unknown 144.9
2503 Female, age 72, unknown 143.9
2769 Male, age 72, unknown 143.9
2227 Male, age 72, unknown 143.6
2725 Female, age 75, unknown 141.9
2823 Male, age 76, right hemisphere 141.8
2785 Male, age 18, unknown 140.1
2588 Male, age 74, left hemisphere 132.7
2584 Male, age 75, left hemisphere 127.0
Substantia nigra
nTPM: 143.1
2699 Male, age 18, unknown 151.9
2409 Female, age 72, unknown 148.6
1916 Female, age 42, unknown 148.0
1851 Male, age 51, unknown 146.8
2241 Male, age 72, unknown 145.2
2590 Female, age 75, unknown 139.8
2665 Male, age 74, both hemispheres 139.6
1941 Male, age 53, unknown 137.9
1889 Female, age 72, unknown 137.6
2583 Male, age 75, right hemisphere 135.4
Superior colliculus
nTPM: 135.4
1995 Male, age 72, unknown 141.7
1913 Female, age 42, unknown 140.4
2587 Male, age 74, left hemisphere 139.9
1839 Male, age 51, unknown 136.3
1895 Male, age 76, right hemisphere 135.0
2087 Female, age 72, unknown 134.5
1796 Male, age 53, unknown 133.9
2668 Female, age 75, unknown 133.2
2261 Male, age 18, unknown 130.4
2664 Male, age 75, both hemispheres 128.2
Ventral tegmental area
nTPM: 141.7
2021 Male, age 53, unknown 145.7
2410 Female, age 72, unknown 144.1
2223 Female, age 72, unknown 142.5
1915 Female, age 42, unknown 142.2
1942 Male, age 51, unknown 138.0
2218 Male, age 76, both hemispheres 137.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 165.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.1
Samples: 139

Max nTPM: 401.3
Min nTPM: 58.9
Std nTPM: 51.0
Median nTPM: 156.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 401.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 342.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 311.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 309.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 300.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 266.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 258.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 256.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 240.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 239.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 238.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.4
FF:10158-103A5 76 years, female 167.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.2
Pig sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 48.2
Min nTPM: 17.2
Sample A Female 48.2
Sample B Female 33.2
Sample C Male 17.2
Sample D Male 19.2
Periaqueductal gray
nTPM: 32.5
Samples: 3

Max nTPM: 33.4
Min nTPM: 32.0
Sample B Female 32.2
Sample C Male 33.4
Sample D Male 32.0
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 41.7
Min nTPM: 26.4
Sample A Female 37.7
Sample B Female 41.7
Sample C Male 26.4
Sample D Male 31.2
Superior colliculi
nTPM: 39.3
Samples: 4

Max nTPM: 72.8
Min nTPM: 20.9
Sample A Female 39.1
Sample B Female 72.8
Sample C Male 20.9
Sample D Male 24.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.4
Samples: 4

Max nTPM: 66.3
Min nTPM: 60.3
Sample A Male 61.2
Sample B Male 60.3
Sample C Female 61.9
Sample D Female 66.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68196930 Antisense, RP_041116_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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