MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1168.8 nTPM
HPA:1168.8 nTPM
GTEx:1020.9 nTPM
FANTOM5:101.8 Scaled Tags Per Million
Pig:317.1 nTPM
Mouse:616.0 nTPM
Allen mouse:12.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1168.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1155.1
1870 Female, age 42, unknown 1172.0
2411 Female, age 72, unknown 1165.0
1827 Male, age 72, unknown 1164.3
2666 Male, age 74, left hemisphere 1163.0
2828 Female, age 72, unknown 1157.4
1833 Male, age 53, unknown 1153.6
2019 Male, age 18, unknown 1148.0
1830 Male, age 51, unknown 1147.4
2586 Male, age 75, left hemisphere 1142.6
2219 Male, age 76, both hemispheres 1137.1
Dorsal raphe nucleus
nTPM: 1154.9
2298 Female, age 72, unknown 1167.5
2750 Male, age 76, both hemispheres 1156.1
1828 Male, age 53, unknown 1154.6
2016 Female, age 72, unknown 1152.0
2047 Male, age 72, unknown 1144.1
Inferior colliculus
nTPM: 1165.9
2849 Male, age 72, unknown 1174.8
1890 Male, age 53, unknown 1170.4
2097 Female, age 72, unknown 1161.2
1848 Female, age 42, unknown 1157.1
Median raphe nucleus
nTPM: 1152.0
2220 Male, age 76, midline 1152.0
Pedunculopontine tegmental nucleus
nTPM: 1168.8
2334 Male, age 80, both hemispheres 1182.8
2338 Male, age 61, both hemispheres 1172.3
1921 Female, age 85, both hemispheres 1151.4
Periaquaductal grey, anterior
nTPM: 1153.6
2502 Female, age 75, unknown 1171.3
1795 Male, age 51, unknown 1145.9
1947 Male, age 18, unknown 1143.6
Periaquaductal grey, dorsal
nTPM: 1155.9
1840 Male, age 53, unknown 1177.8
1831 Male, age 72, unknown 1155.2
2850 Male, age 76, both hemispheres 1153.7
2464 Female, age 72, unknown 1136.8
Periaquaductal grey, lateral
nTPM: 1141.8
2053 Male, age 18, unknown 1163.3
2140 Male, age 76, both hemispheres 1139.7
2272 Male, age 74, both hemispheres 1122.3
Pretectal area
nTPM: 1150.1
1817 Female, age 42, unknown 1156.0
2825 Male, age 18, unknown 1155.5
1815 Male, age 53, unknown 1155.4
2224 Female, age 72, unknown 1154.2
2407 Male, age 75, both hemispheres 1152.3
1816 Male, age 51, unknown 1151.5
1944 Female, age 72, unknown 1151.3
2007 Male, age 72, unknown 1150.4
2316 Male, age 76, right hemisphere 1150.3
2667 Female, age 75, unknown 1144.4
2273 Male, age 74, both hemispheres 1130.1
Red nucleus
nTPM: 1160.3
1821 Female, age 72, unknown 1181.3
2725 Female, age 75, unknown 1181.1
2503 Female, age 72, unknown 1174.6
2584 Male, age 75, left hemisphere 1167.7
1865 Male, age 51, unknown 1165.1
2769 Male, age 72, unknown 1159.5
2588 Male, age 74, left hemisphere 1156.7
1904 Male, age 53, unknown 1152.7
2227 Male, age 72, unknown 1149.9
1954 Female, age 42, unknown 1148.2
2785 Male, age 18, unknown 1144.2
2823 Male, age 76, right hemisphere 1142.9
Substantia nigra
nTPM: 1167.2
2665 Male, age 74, both hemispheres 1193.8
2699 Male, age 18, unknown 1189.1
2409 Female, age 72, unknown 1184.2
1851 Male, age 51, unknown 1182.9
2241 Male, age 72, unknown 1168.6
1889 Female, age 72, unknown 1167.3
1916 Female, age 42, unknown 1162.8
1941 Male, age 53, unknown 1148.4
2590 Female, age 75, unknown 1138.9
2583 Male, age 75, right hemisphere 1136.4
Superior colliculus
nTPM: 1158.2
2587 Male, age 74, left hemisphere 1197.8
1895 Male, age 76, right hemisphere 1169.0
1913 Female, age 42, unknown 1160.6
1839 Male, age 51, unknown 1159.0
1995 Male, age 72, unknown 1157.9
1796 Male, age 53, unknown 1155.1
2668 Female, age 75, unknown 1154.2
2664 Male, age 75, both hemispheres 1145.8
2261 Male, age 18, unknown 1141.8
2087 Female, age 72, unknown 1140.8
Ventral tegmental area
nTPM: 1157.1
1915 Female, age 42, unknown 1182.8
2223 Female, age 72, unknown 1157.3
2410 Female, age 72, unknown 1155.5
2021 Male, age 53, unknown 1153.5
1942 Male, age 51, unknown 1148.5
2218 Male, age 76, both hemispheres 1145.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1020.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1020.9
Samples: 139

Max nTPM: 3642.6
Min nTPM: 434.7
Std nTPM: 424.9
Median nTPM: 930.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3642.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2448.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2427.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2202.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2134.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2098.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2011.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1657.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1633.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1616.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1517.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.8
FF:10158-103A5 76 years, female 101.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 317.1
Pig sample Sample description nTPM
Midbrain
nTPM: 304.0
Samples: 4

Max nTPM: 386.8
Min nTPM: 245.9
Sample A Female 386.8
Sample B Female 334.1
Sample C Male 245.9
Sample D Male 249.0
Periaqueductal gray
nTPM: 241.0
Samples: 3

Max nTPM: 253.2
Min nTPM: 232.0
Sample B Female 253.2
Sample C Male 237.8
Sample D Male 232.0
Substantia nigra
nTPM: 295.8
Samples: 4

Max nTPM: 384.7
Min nTPM: 240.2
Sample A Female 384.7
Sample B Female 299.8
Sample C Male 258.4
Sample D Male 240.2
Superior colliculi
nTPM: 317.1
Samples: 4

Max nTPM: 355.3
Min nTPM: 283.5
Sample A Female 355.3
Sample B Female 318.2
Sample C Male 311.4
Sample D Male 283.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 616.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 616.1
Samples: 4

Max nTPM: 654.7
Min nTPM: 575.2
Sample A Male 654.7
Sample B Male 607.2
Sample C Female 575.2
Sample D Female 627.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
69262115 Antisense, RP_050224_01_A12, Mouse strain C57BL/6J (56 days, male) 12.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.