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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:588.3 nTPM
GTEx:588.3 nTPM
FANTOM5:57.7 Scaled Tags Per Million
Pig:120.4 nTPM
Mouse:864.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 588.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 588.3
Samples: 105

Max nTPM: 799.0
Min nTPM: 422.8
Std nTPM: 82.3
Median nTPM:
379_1 60 years, male 799.0
246_1 77 years, male 768.3
384_1 83 years, male 750.0
321_1 62 years, female 747.1
153_1 70 years, female 746.4
452_1 88 years, female 736.9
237_1 82 years, male 728.5
447_1 81 years, male 723.2
120_1 70 years, female 721.9
389_1 86 years, female 720.4
35_1 74 years, female 719.7
307_1 66 years, female 711.5
2_1 77 years, female 710.7
17_1 71 years, male 688.4
218_1 71 years, female 685.7
139_1 64 years, female 677.2
491_1 89 years, female 675.0
375_1 74 years, female 670.1
4_1 88 years, female 665.7
396_1 62 years, male 664.1
495_1 57 years, female 663.9
377_1 82 years, female 662.3
265_1 87 years, male 661.8
386_1 76 years, male 655.9
376_1 75 years, female 652.8
322_1 76 years, male 650.7
189_1 76 years, male 649.5
315_1 62 years, female 644.0
126_1 63 years, male 629.8
145_1 84 years, male 628.2
229_1 69 years, female 626.3
254_1 77 years, female 622.7
308_1 70 years, female 620.6
404_1 82 years, female 618.0
348_1 84 years, male 616.0
311_1 78 years, male 613.9
162_1 79 years, female 613.0
41_1 94 years, female 612.2
414_1 84 years, female 608.1
413_1 59 years, female 606.9
394_1 75 years, female 606.6
347_1 72 years, male 606.3
173_1 67 years, male 604.6
355_1 70 years, female 603.5
137_1 83 years, male 600.7
466_1 57 years, female 596.7
518_1 75 years, female 594.8
526_1 61 years, male 588.9
266_1 85 years, male 587.3
354_1 81 years, female 580.8
264_1 73 years, female 579.3
501_1 88 years, male 578.0
320_1 89 years, female 574.3
6_1 73 years, female 572.6
353_1 82 years, female 570.1
251_1 78 years, male 569.2
415_1 77 years, female 566.2
217_1 76 years, male 566.0
351_1 91 years, male 565.7
288_1 66 years, female 565.6
490_1 67 years, female 562.5
405_1 91 years, male 561.7
117_1 61 years, male 561.6
352_1 62 years, male 560.6
42_1 85 years, male 560.1
335_1 73 years, female 560.0
177_1 74 years, male 556.6
295_1 61 years, female 554.8
468_1 89 years, male 550.6
243_1 75 years, male 548.8
316_1 62 years, male 548.0
319_1 81 years, male 544.0
119_1 70 years, female 543.7
499_1 55 years, female 541.4
163_1 78 years, male 540.6
317_1 60 years, male 536.3
89_1 63 years, male 531.2
314_1 67 years, male 530.0
349_1 83 years, male 529.9
291_1 76 years, male 527.0
18_1 88 years, male 526.5
109_1 81 years, female 522.1
324_1 76 years, male 518.8
115_1 83 years, male 518.0
503_1 68 years, male 513.6
142_1 61 years, female 511.3
81_1 67 years, male 505.9
517_1 88 years, male 501.1
99_1 64 years, male 500.6
172_1 72 years, female 498.5
286_1 68 years, female 496.4
480_1 63 years, male 494.4
43_1 64 years, female 486.2
318_1 68 years, male 486.0
425_1 59 years, female 484.3
506_1 65 years, male 484.0
313_1 79 years, female 480.0
406_1 79 years, male 479.3
356_1 87 years, female 478.8
32_1 67 years, male 473.4
293_1 68 years, female 459.8
292_1 71 years, male 455.8
350_1 84 years, female 453.2
9_1 66 years, female 424.5
149_1 88 years, male 422.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 57.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 57.7
FF:10030-101E3 24-65 years, mixed 57.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.4
Pig sample Sample description nTPM
Retina
nTPM: 120.4
Samples: 4

Max nTPM: 133.3
Min nTPM: 112.1
Sample A Female 114.4
Sample B Female 121.9
Sample C Male 133.3
Sample D Male 112.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 864.2
Mouse sample Sample description nTPM
Retina
nTPM: 864.3
Samples: 4

Max nTPM: 1014.1
Min nTPM: 750.7
Sample A Male 886.1
Sample B Male 750.7
Sample C Female 1014.1
Sample D Female 806.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.