MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.5 nTPM
HPA:80.5 nTPM
GTEx:141.9 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:47.5 nTPM
Mouse:325.4 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.0
1870 Female, age 42, unknown 80.3
2411 Female, age 72, unknown 77.3
2019 Male, age 18, unknown 76.6
1833 Male, age 53, unknown 76.3
2828 Female, age 72, unknown 76.2
1827 Male, age 72, unknown 75.6
2586 Male, age 75, left hemisphere 74.2
1830 Male, age 51, unknown 72.8
2219 Male, age 76, both hemispheres 72.0
2666 Male, age 74, left hemisphere 68.8
Dorsal raphe nucleus
nTPM: 78.7
2298 Female, age 72, unknown 82.5
1828 Male, age 53, unknown 79.3
2047 Male, age 72, unknown 78.5
2750 Male, age 76, both hemispheres 77.7
2016 Female, age 72, unknown 75.7
Inferior colliculus
nTPM: 75.9
1890 Male, age 53, unknown 76.3
2097 Female, age 72, unknown 76.3
2849 Male, age 72, unknown 75.6
1848 Female, age 42, unknown 75.5
Median raphe nucleus
nTPM: 80.5
2220 Male, age 76, midline 80.5
Pedunculopontine tegmental nucleus
nTPM: 78.2
2334 Male, age 80, both hemispheres 81.3
2338 Male, age 61, both hemispheres 76.7
1921 Female, age 85, both hemispheres 76.6
Periaquaductal grey, anterior
nTPM: 76.7
1947 Male, age 18, unknown 78.5
2502 Female, age 75, unknown 77.0
1795 Male, age 51, unknown 74.5
Periaquaductal grey, dorsal
nTPM: 76.0
2850 Male, age 76, both hemispheres 82.5
1840 Male, age 53, unknown 77.3
1831 Male, age 72, unknown 72.4
2464 Female, age 72, unknown 71.9
Periaquaductal grey, lateral
nTPM: 75.8
2272 Male, age 74, both hemispheres 78.3
2053 Male, age 18, unknown 76.3
2140 Male, age 76, both hemispheres 72.7
Pretectal area
nTPM: 78.6
2667 Female, age 75, unknown 83.8
1817 Female, age 42, unknown 82.6
1816 Male, age 51, unknown 80.6
1944 Female, age 72, unknown 80.2
2007 Male, age 72, unknown 78.4
2224 Female, age 72, unknown 78.3
1815 Male, age 53, unknown 78.2
2273 Male, age 74, both hemispheres 77.8
2407 Male, age 75, both hemispheres 75.6
2825 Male, age 18, unknown 75.6
2316 Male, age 76, right hemisphere 73.3
Red nucleus
nTPM: 76.6
1821 Female, age 72, unknown 81.5
2725 Female, age 75, unknown 79.7
1954 Female, age 42, unknown 77.9
1865 Male, age 51, unknown 77.8
2823 Male, age 76, right hemisphere 77.0
1904 Male, age 53, unknown 76.8
2785 Male, age 18, unknown 76.3
2503 Female, age 72, unknown 76.2
2769 Male, age 72, unknown 76.1
2227 Male, age 72, unknown 75.0
2584 Male, age 75, left hemisphere 74.2
2588 Male, age 74, left hemisphere 70.8
Substantia nigra
nTPM: 77.5
2241 Male, age 72, unknown 84.6
1889 Female, age 72, unknown 80.4
1916 Female, age 42, unknown 79.4
1851 Male, age 51, unknown 78.8
2409 Female, age 72, unknown 77.0
2699 Male, age 18, unknown 76.9
1941 Male, age 53, unknown 76.8
2665 Male, age 74, both hemispheres 75.1
2583 Male, age 75, right hemisphere 73.1
2590 Female, age 75, unknown 72.6
Superior colliculus
nTPM: 75.0
1895 Male, age 76, right hemisphere 77.9
2587 Male, age 74, left hemisphere 77.9
2664 Male, age 75, both hemispheres 75.7
1839 Male, age 51, unknown 75.2
2087 Female, age 72, unknown 74.8
1913 Female, age 42, unknown 74.3
1796 Male, age 53, unknown 74.1
2261 Male, age 18, unknown 74.0
1995 Male, age 72, unknown 73.9
2668 Female, age 75, unknown 72.2
Ventral tegmental area
nTPM: 77.3
2410 Female, age 72, unknown 79.3
2223 Female, age 72, unknown 78.7
2218 Male, age 76, both hemispheres 77.9
1915 Female, age 42, unknown 76.7
1942 Male, age 51, unknown 76.7
2021 Male, age 53, unknown 74.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 141.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.9
Samples: 139

Max nTPM: 209.9
Min nTPM: 88.4
Std nTPM: 24.6
Median nTPM: 140.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 209.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 198.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 191.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 190.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 185.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 185.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 184.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 181.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 181.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 181.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 177.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.4
FF:10158-103A5 76 years, female 167.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.5
Pig sample Sample description nTPM
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 60.8
Min nTPM: 41.6
Sample A Female 60.8
Sample B Female 44.8
Sample C Male 42.8
Sample D Male 41.6
Periaqueductal gray
nTPM: 40.6
Samples: 3

Max nTPM: 45.1
Min nTPM: 38.2
Sample B Female 38.5
Sample C Male 45.1
Sample D Male 38.2
Substantia nigra
nTPM: 42.8
Samples: 4

Max nTPM: 53.5
Min nTPM: 36.9
Sample A Female 53.5
Sample B Female 37.5
Sample C Male 43.3
Sample D Male 36.9
Superior colliculi
nTPM: 45.6
Samples: 4

Max nTPM: 57.4
Min nTPM: 37.1
Sample A Female 57.4
Sample B Female 37.1
Sample C Male 46.5
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 325.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 325.5
Samples: 4

Max nTPM: 348.0
Min nTPM: 311.5
Sample A Male 323.3
Sample B Male 319.0
Sample C Female 311.5
Sample D Female 348.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
69262338 Antisense, RP_050303_02_B08, Mouse strain C57BL/6J (56 days, male) 8.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.