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EEF1B2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:181.5 nTPM
HPA:181.5 nTPM
GTEx:453.0 nTPM
FANTOM5:105.6 Scaled Tags Per Million
Pig:142.0 nTPM
Mouse:156.5 nTPM
Allen mouse:9.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 181.5
Sample id Sample description nTPM
Amygdala
nTPM: 179.4
2695 Female, age 67, right hemisphere 186.5
2514 Male, age 75, right hemisphere 180.7
2517 Female, age 94, left hemisphere 177.9
1987 Female, age 91, left hemisphere 176.8
2814 Male, age 76, right hemisphere 175.2
Basal amygdala
nTPM: 174.2
2827 Female, age 67, right hemisphere 192.5
2609 Male, age 75, right hemisphere 173.1
2110 Male, age 80, left hemisphere 173.0
2685 Female, age 94, left hemisphere 172.3
2243 Female, age 91, right hemisphere 167.6
1955 Male, age 76, both hemispheres 167.0
Central amygdala
nTPM: 177.0
2826 Female, age 94, left hemisphere 197.8
2515 Male, age 75, right hemisphere 176.6
1905 Male, age 76, both hemispheres 172.1
2239 Male, age 80, left hemisphere 169.8
2701 Female, age 91, right hemisphere 168.8
Corticomedial amygdala
nTPM: 172.0
2535 Female, age 67, right hemisphere 175.9
2428 Male, age 75, right hemisphere 172.8
2829 Male, age 80, left hemisphere 172.0
2429 Female, age 94, left hemisphere 171.2
2240 Male, age 76, both hemispheres 170.0
2242 Female, age 91, right hemisphere 169.8
Lateral amygdala
nTPM: 181.5
2830 Female, age 67, right hemisphere 207.0
2516 Male, age 75, right hemisphere 188.8
2534 Female, age 94, left hemisphere 183.2
2256 Male, age 80, left hemisphere 172.0
1883 Male, age 76, both hemispheres 171.5
2255 Female, age 91, right hemisphere 166.5
Stria terminalis, bed nucleus
nTPM: 167.9
1974 Female, age 91, both hemispheres 172.3
2201 Male, age 74, unknown 168.0
2486 Female, age 94, both hemispheres 163.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 453.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 453.0
Samples: 152

Max nTPM: 1198.4
Min nTPM: 196.6
Std nTPM: 170.1
Median nTPM: 403.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1198.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1075.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1038.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 983.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 951.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 879.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 834.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 798.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 778.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 729.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 696.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 687.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 683.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 682.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 679.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 676.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 636.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 630.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 618.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 614.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 613.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 613.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 610.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 610.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 595.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 572.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 569.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 562.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 558.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 556.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 551.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 542.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 533.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 529.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 522.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 521.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 520.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 519.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 518.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 517.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 514.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 514.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 511.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 506.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 495.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 494.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 494.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 489.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 488.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 483.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 482.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 479.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 477.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 474.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 463.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 459.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 457.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 457.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 453.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 453.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 442.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 438.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 437.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 434.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 432.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 429.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 420.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 417.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 417.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 411.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 407.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 406.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 405.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 404.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 404.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 403.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 402.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 401.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 400.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 400.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 399.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 398.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 398.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 397.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 395.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 395.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 392.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 390.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 389.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 389.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 385.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 384.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 384.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 382.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 380.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 379.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 376.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 376.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 375.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 369.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 367.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 365.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 363.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 356.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 355.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 351.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 350.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 347.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 346.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 346.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 344.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 343.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 337.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 336.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 335.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 335.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 335.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 335.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 332.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 331.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 326.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 322.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 320.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 318.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 315.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 314.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 313.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 311.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 305.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 305.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 301.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 298.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 298.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 297.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 296.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 294.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 291.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 290.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 288.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 285.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 284.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 280.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 280.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 271.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 268.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 265.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 260.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 256.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 255.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 254.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 241.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 196.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 105.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 105.6
FF:10151-102I7 76 years, female 105.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 142.0
Pig sample Sample description nTPM
Amygdala
nTPM: 142.0
Samples: 4

Max nTPM: 185.2
Min nTPM: 99.8
Sample A Female 185.2
Sample B Female 149.8
Sample C Male 133.3
Sample D Male 99.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 156.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 156.5
Samples: 4

Max nTPM: 169.6
Min nTPM: 146.3
Sample A Male 155.7
Sample B Male 154.5
Sample C Female 169.6
Sample D Female 146.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
75934526 Antisense, RP_060530_01_E02, Mouse strain C57BL/6J (56 days, male) 11.9
68443148 Antisense, RP_050111_01_D10, Mouse strain C57BL/6J (56 days, male) 7.6

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