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EEF1B2
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:192.7 nTPM
HPA:192.7 nTPM
GTEx:471.7 nTPM
FANTOM5:185.4 Scaled Tags Per Million
Pig:191.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 192.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 177.3
1981 Female, age 72, midline 183.9
2565 Male, age 75, midline 183.3
2048 Male, age 55, midline 173.4
2194 Female, age 79, both hemispheres 172.9
2816 Male, age 47, midline 172.9
Cervical spinal cord, dorsal horn
nTPM: 179.7
2173 Female, age 72, unknown 192.2
2069 Male, age 47, both hemispheres 189.1
2296 Male, age 66, both hemispheres 186.2
1877 Male, age 55, unknown 176.0
2297 Male, age 75, both hemispheres 168.8
2721 Male, age 90, both hemispheres 165.9
Cervical spinal cord, ventral horn
nTPM: 192.7
2480 Male, age 75, both hemispheres 217.9
2809 Male, age 90, both hemispheres 202.9
2098 Female, age 72, unknown 195.4
2295 Male, age 66, both hemispheres 188.7
2068 Male, age 55, unknown 181.0
2820 Female, age 79, both hemispheres 170.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 471.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 471.7
Samples: 159

Max nTPM: 984.7
Min nTPM: 190.7
Std nTPM: 156.6
Median nTPM: 443.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 984.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 902.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 898.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 850.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 842.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 821.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 820.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 810.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 803.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 792.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 730.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 724.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 719.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 695.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 687.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 682.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 682.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 681.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 672.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 668.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 661.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 658.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 650.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 650.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 650.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 647.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 638.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 636.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 632.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 625.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 621.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 619.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 600.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 593.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 584.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 574.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 573.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 560.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 558.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 546.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 545.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 539.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 539.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 536.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 535.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 528.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 526.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 519.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 518.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 514.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 513.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 509.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 505.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 503.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 501.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 500.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 500.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 495.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 494.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 493.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 492.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 482.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 481.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 479.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 472.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 471.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 470.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 467.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 467.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 467.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 463.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 461.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 458.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 458.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 455.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 449.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 444.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 444.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 444.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 443.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 441.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 438.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 437.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 434.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 431.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 430.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 427.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 427.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 421.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 421.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 414.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 412.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 411.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 408.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 407.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 400.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 400.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 399.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 396.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 392.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 390.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 390.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 389.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 385.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 382.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 381.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 378.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 378.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 377.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 377.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 374.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 371.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 370.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 369.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 369.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 369.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 369.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 368.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 365.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 363.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 357.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 354.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 354.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 351.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 346.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 346.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 345.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 344.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 341.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 341.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 332.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 329.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 327.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 324.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 324.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 323.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 323.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 319.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 318.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 307.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 306.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 302.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 298.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 289.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 285.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 281.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 280.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 278.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 275.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 274.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 274.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 268.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 266.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 263.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 245.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 239.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 222.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 218.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 190.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 185.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 185.4
FF:10181-103D1 60 years, female 222.1
FF:10159-103A6 76 years, female 148.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 191.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 191.5
Samples: 4

Max nTPM: 266.5
Min nTPM: 149.6
Sample A Female 149.8
Sample B Female 200.2
Sample C Male 266.5
Sample D Male 149.6
Ventral spinal cord
nTPM: 167.9
Samples: 4

Max nTPM: 190.2
Min nTPM: 135.5
Sample A Female 135.5
Sample B Female 177.5
Sample C Male 190.2
Sample D Male 168.3

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