MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.3 nTPM
HPA:49.3 nTPM
GTEx:38.7 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:18.8 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.0
2019 Male, age 18, unknown 50.2
1870 Female, age 42, unknown 48.1
2411 Female, age 72, unknown 47.8
1833 Male, age 53, unknown 46.7
1830 Male, age 51, unknown 46.3
2828 Female, age 72, unknown 46.3
2586 Male, age 75, left hemisphere 45.8
2666 Male, age 74, left hemisphere 43.2
1827 Male, age 72, unknown 42.9
2219 Male, age 76, both hemispheres 42.3
Dorsal raphe nucleus
nTPM: 44.6
2750 Male, age 76, both hemispheres 47.4
2298 Female, age 72, unknown 45.0
1828 Male, age 53, unknown 44.6
2047 Male, age 72, unknown 43.5
2016 Female, age 72, unknown 42.7
Inferior colliculus
nTPM: 42.6
1890 Male, age 53, unknown 44.1
2097 Female, age 72, unknown 44.1
1848 Female, age 42, unknown 41.3
2849 Male, age 72, unknown 41.0
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Pedunculopontine tegmental nucleus
nTPM: 44.1
2334 Male, age 80, both hemispheres 45.6
1921 Female, age 85, both hemispheres 43.4
2338 Male, age 61, both hemispheres 43.3
Periaquaductal grey, anterior
nTPM: 41.0
2502 Female, age 75, unknown 42.0
1795 Male, age 51, unknown 41.0
1947 Male, age 18, unknown 39.9
Periaquaductal grey, dorsal
nTPM: 40.8
2464 Female, age 72, unknown 43.3
1831 Male, age 72, unknown 42.4
2850 Male, age 76, both hemispheres 38.8
1840 Male, age 53, unknown 38.6
Periaquaductal grey, lateral
nTPM: 40.7
2053 Male, age 18, unknown 41.6
2272 Male, age 74, both hemispheres 40.4
2140 Male, age 76, both hemispheres 40.2
Pretectal area
nTPM: 43.4
1815 Male, age 53, unknown 46.3
2667 Female, age 75, unknown 46.2
1817 Female, age 42, unknown 44.4
2007 Male, age 72, unknown 43.8
2316 Male, age 76, right hemisphere 43.3
2825 Male, age 18, unknown 43.3
2407 Male, age 75, both hemispheres 42.6
2273 Male, age 74, both hemispheres 42.3
2224 Female, age 72, unknown 41.9
1816 Male, age 51, unknown 41.8
1944 Female, age 72, unknown 41.2
Red nucleus
nTPM: 49.3
1821 Female, age 72, unknown 52.6
1904 Male, age 53, unknown 51.3
2769 Male, age 72, unknown 51.3
2823 Male, age 76, right hemisphere 51.3
2227 Male, age 72, unknown 50.9
1954 Female, age 42, unknown 50.1
2785 Male, age 18, unknown 49.3
1865 Male, age 51, unknown 48.5
2588 Male, age 74, left hemisphere 47.7
2503 Female, age 72, unknown 47.3
2584 Male, age 75, left hemisphere 46.0
2725 Female, age 75, unknown 45.0
Substantia nigra
nTPM: 43.3
2583 Male, age 75, right hemisphere 47.3
1851 Male, age 51, unknown 45.3
2699 Male, age 18, unknown 44.5
1889 Female, age 72, unknown 44.3
2665 Male, age 74, both hemispheres 43.8
2590 Female, age 75, unknown 43.1
1916 Female, age 42, unknown 42.4
2409 Female, age 72, unknown 41.3
1941 Male, age 53, unknown 41.0
2241 Male, age 72, unknown 39.7
Superior colliculus
nTPM: 43.8
1913 Female, age 42, unknown 48.7
1995 Male, age 72, unknown 48.3
2587 Male, age 74, left hemisphere 44.7
1839 Male, age 51, unknown 43.9
2668 Female, age 75, unknown 43.3
2664 Male, age 75, both hemispheres 43.2
1895 Male, age 76, right hemisphere 42.5
1796 Male, age 53, unknown 42.3
2087 Female, age 72, unknown 42.1
2261 Male, age 18, unknown 39.4
Ventral tegmental area
nTPM: 44.3
2223 Female, age 72, unknown 46.1
2410 Female, age 72, unknown 46.0
1915 Female, age 42, unknown 44.5
2021 Male, age 53, unknown 43.8
1942 Male, age 51, unknown 43.7
2218 Male, age 76, both hemispheres 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.7
Samples: 139

Max nTPM: 85.0
Min nTPM: 27.1
Std nTPM: 8.9
Median nTPM: 36.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 85.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 76.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 63.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 62.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 60.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 55.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 49.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 17.7
Min nTPM: 7.9
Sample A Female 17.7
Sample B Female 9.1
Sample C Male 7.9
Sample D Male 7.9
Periaqueductal gray
nTPM: 8.5
Samples: 3

Max nTPM: 8.6
Min nTPM: 8.5
Sample B Female 8.6
Sample C Male 8.5
Sample D Male 8.5
Substantia nigra
nTPM: 10.9
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.1
Sample A Female 11.8
Sample B Female 10.5
Sample C Male 9.1
Sample D Male 12.2
Superior colliculi
nTPM: 10.6
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.6
Sample A Female 12.7
Sample B Female 11.0
Sample C Male 8.6
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 16.6
Sample A Male 18.6
Sample B Male 16.6
Sample C Female 19.1
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
227165 Antisense, RP_040604_02_C01, Mouse strain C57BL/6J (56 days, male) 7.0
74990522 Antisense, RP_060410_01_C05, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.