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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:123.2 nTPM
HPA:123.2 nTPM
GTEx:128.2 nTPM
FANTOM5:81.7 Scaled Tags Per Million
Pig:103.1 nTPM
Mouse:194.3 nTPM
Allen mouse:6.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 123.2
Sample id Sample description nTPM
Amygdala
nTPM: 84.8
2814 Male, age 76, right hemisphere 103.1
2517 Female, age 94, left hemisphere 99.3
1987 Female, age 91, left hemisphere 95.2
2695 Female, age 67, right hemisphere 67.5
2514 Male, age 75, right hemisphere 58.9
Basal amygdala
nTPM: 95.5
2685 Female, age 94, left hemisphere 139.1
2110 Male, age 80, left hemisphere 105.3
1955 Male, age 76, both hemispheres 89.3
2243 Female, age 91, right hemisphere 84.2
2827 Female, age 67, right hemisphere 81.3
2609 Male, age 75, right hemisphere 73.9
Central amygdala
nTPM: 100.8
1905 Male, age 76, both hemispheres 122.3
2701 Female, age 91, right hemisphere 115.6
2239 Male, age 80, left hemisphere 99.6
2515 Male, age 75, right hemisphere 88.6
2826 Female, age 94, left hemisphere 77.7
Corticomedial amygdala
nTPM: 96.9
2535 Female, age 67, right hemisphere 133.2
2242 Female, age 91, right hemisphere 118.5
2429 Female, age 94, left hemisphere 94.7
2240 Male, age 76, both hemispheres 84.2
2829 Male, age 80, left hemisphere 80.7
2428 Male, age 75, right hemisphere 70.0
Lateral amygdala
nTPM: 78.5
1883 Male, age 76, both hemispheres 108.7
2255 Female, age 91, right hemisphere 106.2
2516 Male, age 75, right hemisphere 70.1
2830 Female, age 67, right hemisphere 67.2
2534 Female, age 94, left hemisphere 67.0
2256 Male, age 80, left hemisphere 51.9
Stria terminalis, bed nucleus
nTPM: 123.2
2201 Male, age 74, unknown 131.7
1974 Female, age 91, both hemispheres 127.5
2486 Female, age 94, both hemispheres 110.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 128.2
Samples: 152

Max nTPM: 432.0
Min nTPM: 34.7
Std nTPM: 67.4
Median nTPM: 110.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 432.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 418.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 323.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 311.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 293.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 280.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 265.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 263.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 250.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 241.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 236.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 231.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 226.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 225.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 225.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 214.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 209.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 200.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 193.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 191.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 188.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 188.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 188.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 184.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 183.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 177.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 176.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 169.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 167.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 167.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 166.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 164.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 161.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 160.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 158.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 157.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 156.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 156.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 155.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 155.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 155.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 154.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 153.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 152.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 151.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 151.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 149.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 148.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 148.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 143.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 142.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 141.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 139.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 139.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 138.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 138.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 136.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 134.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 129.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 128.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 125.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 123.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 121.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 120.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 119.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 119.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 117.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 117.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 117.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 117.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 114.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 114.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 112.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 111.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 110.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 110.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 109.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 108.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 107.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 107.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 107.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 106.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 103.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 103.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 103.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 103.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 102.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 101.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 101.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 101.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 98.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 97.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 97.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 95.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 95.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 93.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 92.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 90.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 89.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 87.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 86.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 85.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 85.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 84.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 83.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 82.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 82.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 81.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 81.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 80.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 79.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 77.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 77.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 74.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 71.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 70.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 68.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 68.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 68.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 68.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 67.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 67.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 67.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 65.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 65.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 63.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 61.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 60.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 60.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 58.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 58.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 55.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 55.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 54.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 53.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 52.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 52.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 48.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 46.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 36.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 34.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 81.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 81.7
FF:10151-102I7 76 years, female 81.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 103.1
Pig sample Sample description nTPM
Amygdala
nTPM: 103.1
Samples: 4

Max nTPM: 138.5
Min nTPM: 51.8
Sample A Female 137.5
Sample B Female 51.8
Sample C Male 84.5
Sample D Male 138.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 194.3
Samples: 4

Max nTPM: 248.5
Min nTPM: 128.4
Sample A Male 248.5
Sample B Male 193.8
Sample C Female 128.4
Sample D Female 206.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.0
74581395 Antisense, RP_060117_02_C04, Mouse strain C57BL/6J (56 days, male) 7.5
69080026 Antisense, RP_050324_01_E04, Mouse strain C57BL/6J (56 days, male) 4.5

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