BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:140.0 nTPM
HPA:140.0 nTPM
GTEx:45.0 nTPM
FANTOM5:62.2 Scaled Tags Per Million
Pig:43.3 nTPM
Mouse:107.6 nTPM
Allen mouse:2.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043245
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 140.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.5
1781 Male, age 74, unknown 63.3
2288 Male, age 75, left hemisphere 54.1
2481 Female, age 94, left hemisphere 43.8
2846 Female, age 79, unknown 38.6
2289 Male, age 61, right hemisphere 37.4
1857 Female, age 85, left hemisphere 31.9
2290 Female, age 72, unknown 31.5
1854 Male, age 80, left hemisphere 31.0
Claustrum
nTPM: 58.3
2491 Male, age 75, both hemispheres 82.5
2392 Female, age 94, both hemispheres 65.1
1956 Male, age 74, unknown 60.6
2568 Male, age 61, both hemispheres 55.2
2284 Female, age 91, both hemispheres 53.9
2292 Female, age 85, both hemispheres 53.5
2196 Female, age 79, unknown 51.7
2198 Male, age 80, both hemispheres 51.6
2645 Female, age 72, unknown 50.6
Globus pallidus, externus
nTPM: 48.8
2646 Male, age 61, right hemisphere 57.5
2395 Male, age 75, both hemispheres 56.5
2772 Female, age 79, unknown 47.1
1996 Male, age 80, right hemisphere 42.0
2567 Female, age 72, unknown 40.8
Globus pallidus, internus
nTPM: 46.1
2287 Male, age 75, right hemisphere 57.8
2483 Female, age 94, right hemisphere 56.2
2566 Female, age 72, unknown 48.4
2778 Female, age 91, both hemispheres 42.7
2037 Male, age 80, right hemisphere 40.9
1818 Male, age 74, unknown 39.5
2111 Female, age 85, right hemisphere 37.1
Nucleus accumbens
nTPM: 40.8
2732 Male, age 80, right hemisphere 54.7
2286 Male, age 75, left hemisphere 48.1
1856 Female, age 91, right hemisphere 43.3
1783 Male, age 74, unknown 40.7
2698 Female, age 72, unknown 40.0
2391 Female, age 94, left hemisphere 34.6
2824 Male, age 61, right hemisphere 33.0
1806 Female, age 85, left hemisphere 32.2
Nucleus basalis of Meynert
nTPM: 46.2
2569 Male, age 61, both hemispheres 57.8
2821 Male, age 75, both hemispheres 49.9
2484 Female, age 94, left hemisphere 42.1
2393 Male, age 80, right hemisphere 35.0
Nucleus of the diagonal band
nTPM: 140.0
1812 Female, age 91, both hemispheres 192.7
2775 Male, age 80, right hemisphere 166.5
2195 Female, age 85, both hemispheres 144.6
2029 Male, age 61, right hemisphere 125.5
1979 Male, age 74, unknown 70.7
Olfactory tubercle
nTPM: 113.3
2487 Female, age 94, left hemisphere 141.6
1998 Female, age 91, both hemispheres 116.7
1846 Male, age 80, right hemisphere 113.4
2856 Male, age 75, right hemisphere 81.4
Putamen
nTPM: 39.6
2647 Male, age 75, left hemisphere 56.7
2466 Female, age 79, unknown 43.0
2482 Female, age 94, left hemisphere 38.8
1937 Female, age 91, right hemisphere 37.5
2489 Female, age 72, unknown 35.0
1829 Male, age 74, unknown 33.9
1838 Male, age 80, right hemisphere 32.0
Septal nuclei
nTPM: 114.0
2031 Female, age 72, unknown 159.8
2009 Female, age 91, both hemispheres 156.4
1960 Male, age 74, unknown 143.3
2629 Female, age 94, right hemisphere 108.2
2059 Female, age 85, both hemispheres 98.2
2394 Male, age 61, left hemisphere 74.7
2199 Male, age 80, right hemisphere 57.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.1
Samples: 246

Max nTPM: 158.5
Min nTPM: 10.8
Std nTPM: 14.9
Median nTPM: 29.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 158.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 126.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 115.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 77.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 67.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 60.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 60.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 60.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 57.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 55.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 54.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.0
Samples: 246

Max nTPM: 185.4
Min nTPM: 17.0
Std nTPM: 22.6
Median nTPM: 40.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 185.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 181.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 181.4
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 123.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 103.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 101.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 85.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 82.7
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 82.4
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 81.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 81.5
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Brain - Putamen (basal ganglia)
Average nTPM: 39.8
Samples: 205

Max nTPM: 91.7
Min nTPM: 18.9
Std nTPM: 11.6
Median nTPM: 37.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 91.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 73.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 69.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 67.0
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 65.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 65.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 64.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 62.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 61.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 61.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 60.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.7
FF:10164-103B2 76 years, female 21.7
Globus pallidus
Scaled Tags Per Million: 18.1
FF:10161-103A8 76 years, female 19.6
FF:10175-103C4 60 years, female 16.5
Nucleus accumbens
Scaled Tags Per Million: 62.2
FF:10037-101F1 23-56 years, mixed 62.2
Putamen
Scaled Tags Per Million: 20.8
FF:10176-103C5 60 years, female 20.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.3
Pig sample Sample description nTPM
Caudate
nTPM: 22.5
Samples: 4

Max nTPM: 27.0
Min nTPM: 15.7
Sample A Female 24.8
Sample B Female 27.0
Sample C Male 22.6
Sample D Male 15.7
Putamen
nTPM: 15.2
Samples: 4

Max nTPM: 20.7
Min nTPM: 9.4
Sample A Female 20.7
Sample B Female 9.4
Sample C Male 16.4
Sample D Male 14.1
Septum
nTPM: 43.3
Samples: 4

Max nTPM: 93.0
Min nTPM: 18.1
Sample A Female 37.1
Sample B Female 25.0
Sample C Male 93.0
Sample D Male 18.1
Ventral pallidum
nTPM: 33.5
Samples: 4

Max nTPM: 72.0
Min nTPM: 17.6
Sample A Female 23.6
Sample B Female 17.6
Sample C Male 72.0
Sample D Male 20.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 107.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 52.7
Samples: 4

Max nTPM: 67.0
Min nTPM: 40.3
Sample A Male 40.3
Sample B Male 52.1
Sample C Female 51.5
Sample D Female 67.0
Septum
nTPM: 107.6
Samples: 4

Max nTPM: 144.8
Min nTPM: 85.5
Sample A Male 144.8
Sample B Male 85.5
Sample C Female 96.3
Sample D Female 103.9
Ventral forebrain
nTPM: 86.9
Samples: 4

Max nTPM: 97.8
Min nTPM: 79.0
Sample A Male 79.0
Sample B Male 97.8
Sample C Female 84.4
Sample D Female 86.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
74581395 Antisense, RP_060117_02_C04, Mouse strain C57BL/6J (56 days, male) 1.3
69080026 Antisense, RP_050324_01_E04, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 2.1
74581395 Antisense, RP_060117_02_C04, Mouse strain C57BL/6J (56 days, male) 2.5
69080026 Antisense, RP_050324_01_E04, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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