BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.4 nTPM
HPA:42.4 nTPM
GTEx:56.5 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:35.1 nTPM
Mouse:104.3 nTPM
Allen mouse:6.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA030554
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.0
2846 Female, age 79, unknown 40.7
1854 Male, age 80, left hemisphere 35.5
2290 Female, age 72, unknown 34.7
1857 Female, age 85, left hemisphere 34.2
2481 Female, age 94, left hemisphere 33.9
2288 Male, age 75, left hemisphere 31.7
1781 Male, age 74, unknown 30.7
2289 Male, age 61, right hemisphere 30.6
Claustrum
nTPM: 32.8
2198 Male, age 80, both hemispheres 37.8
2491 Male, age 75, both hemispheres 36.8
1956 Male, age 74, unknown 35.2
2568 Male, age 61, both hemispheres 34.1
2196 Female, age 79, unknown 33.6
2392 Female, age 94, both hemispheres 29.6
2292 Female, age 85, both hemispheres 29.5
2645 Female, age 72, unknown 29.3
2284 Female, age 91, both hemispheres 28.8
Globus pallidus, externus
nTPM: 42.4
2646 Male, age 61, right hemisphere 46.7
2395 Male, age 75, both hemispheres 42.5
2772 Female, age 79, unknown 42.0
2567 Female, age 72, unknown 41.6
1996 Male, age 80, right hemisphere 39.1
Globus pallidus, internus
nTPM: 39.3
2287 Male, age 75, right hemisphere 52.1
2483 Female, age 94, right hemisphere 49.7
2566 Female, age 72, unknown 40.4
1818 Male, age 74, unknown 36.2
2778 Female, age 91, both hemispheres 34.4
2037 Male, age 80, right hemisphere 33.9
2111 Female, age 85, right hemisphere 28.7
Nucleus accumbens
nTPM: 32.0
1856 Female, age 91, right hemisphere 40.6
2698 Female, age 72, unknown 37.3
1783 Male, age 74, unknown 37.2
1806 Female, age 85, left hemisphere 30.9
2391 Female, age 94, left hemisphere 30.9
2286 Male, age 75, left hemisphere 30.4
2824 Male, age 61, right hemisphere 27.3
2732 Male, age 80, right hemisphere 21.2
Nucleus basalis of Meynert
nTPM: 36.5
2569 Male, age 61, both hemispheres 53.8
2393 Male, age 80, right hemisphere 31.0
2484 Female, age 94, left hemisphere 30.8
2821 Male, age 75, both hemispheres 30.4
Nucleus of the diagonal band
nTPM: 33.5
1812 Female, age 91, both hemispheres 42.4
2775 Male, age 80, right hemisphere 39.2
2195 Female, age 85, both hemispheres 32.7
2029 Male, age 61, right hemisphere 27.9
1979 Male, age 74, unknown 25.4
Olfactory tubercle
nTPM: 32.0
1846 Male, age 80, right hemisphere 39.8
1998 Female, age 91, both hemispheres 35.2
2487 Female, age 94, left hemisphere 26.8
2856 Male, age 75, right hemisphere 26.2
Putamen
nTPM: 36.0
2647 Male, age 75, left hemisphere 46.8
1838 Male, age 80, right hemisphere 37.9
1829 Male, age 74, unknown 36.8
2482 Female, age 94, left hemisphere 34.1
2466 Female, age 79, unknown 33.4
1937 Female, age 91, right hemisphere 32.5
2489 Female, age 72, unknown 30.2
Septal nuclei
nTPM: 29.5
1960 Male, age 74, unknown 39.9
2031 Female, age 72, unknown 35.7
2009 Female, age 91, both hemispheres 31.4
2629 Female, age 94, right hemisphere 27.9
2394 Male, age 61, left hemisphere 26.3
2199 Male, age 80, right hemisphere 22.9
2059 Female, age 85, both hemispheres 22.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.6
Samples: 246

Max nTPM: 71.3
Min nTPM: 27.5
Std nTPM: 7.1
Median nTPM: 49.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 71.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 70.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 64.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 64.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 64.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 63.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 63.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 63.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 63.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 62.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.0
Samples: 246

Max nTPM: 88.4
Min nTPM: 27.8
Std nTPM: 8.3
Median nTPM: 50.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 88.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 73.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 70.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 70.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 69.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 69.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 67.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 67.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 67.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 66.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 65.3
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Brain - Putamen (basal ganglia)
Average nTPM: 56.5
Samples: 205

Max nTPM: 97.7
Min nTPM: 35.7
Std nTPM: 8.0
Median nTPM: 56.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 97.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 93.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 81.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 76.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 75.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 72.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 72.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 72.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 71.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 70.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 68.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.6
FF:10164-103B2 76 years, female 58.6
Globus pallidus
Scaled Tags Per Million: 70.9
FF:10175-103C4 60 years, female 77.3
FF:10161-103A8 76 years, female 64.5
Nucleus accumbens
Scaled Tags Per Million: 91.9
FF:10037-101F1 23-56 years, mixed 91.9
Putamen
Scaled Tags Per Million: 77.6
FF:10176-103C5 60 years, female 77.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.1
Pig sample Sample description nTPM
Caudate
nTPM: 31.1
Samples: 4

Max nTPM: 37.3
Min nTPM: 24.6
Sample A Female 24.6
Sample B Female 33.2
Sample C Male 37.3
Sample D Male 29.2
Putamen
nTPM: 35.1
Samples: 4

Max nTPM: 41.8
Min nTPM: 28.3
Sample A Female 31.8
Sample B Female 28.3
Sample C Male 41.8
Sample D Male 38.6
Septum
nTPM: 29.5
Samples: 4

Max nTPM: 35.2
Min nTPM: 25.3
Sample A Female 29.5
Sample B Female 28.0
Sample C Male 35.2
Sample D Male 25.3
Ventral pallidum
nTPM: 32.3
Samples: 4

Max nTPM: 42.8
Min nTPM: 25.8
Sample A Female 25.8
Sample B Female 29.3
Sample C Male 42.8
Sample D Male 31.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 104.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 103.2
Samples: 4

Max nTPM: 106.3
Min nTPM: 97.9
Sample A Male 106.3
Sample B Male 104.5
Sample C Female 97.9
Sample D Female 103.9
Septum
nTPM: 97.9
Samples: 4

Max nTPM: 102.3
Min nTPM: 93.5
Sample A Male 102.3
Sample B Male 99.0
Sample C Female 96.9
Sample D Female 93.5
Ventral forebrain
nTPM: 104.3
Samples: 4

Max nTPM: 110.5
Min nTPM: 97.5
Sample A Male 97.5
Sample B Male 110.5
Sample C Female 102.5
Sample D Female 106.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.5
70946526 Antisense, RP_050505_01_D05, Mouse strain C57BL/6J (56 days, male) 7.5
74882657 Antisense, RP_060315_04_F12, Mouse strain C57BL/6J (56 days, male) 5.5
Pallidum
Expression energy: 6.3
70946526 Antisense, RP_050505_01_D05, Mouse strain C57BL/6J (56 days, male) 7.1
74882657 Antisense, RP_060315_04_F12, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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