BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA:40.7 nTPM
GTEx:72.0 nTPM
FANTOM5:91.0 Scaled Tags Per Million
Pig:48.3 nTPM
Mouse:109.6 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.1
2846 Female, age 79, unknown 49.3
1781 Male, age 74, unknown 45.2
2290 Female, age 72, unknown 41.5
2481 Female, age 94, left hemisphere 40.5
1857 Female, age 85, left hemisphere 38.2
2289 Male, age 61, right hemisphere 36.5
1854 Male, age 80, left hemisphere 36.2
2288 Male, age 75, left hemisphere 33.1
Claustrum
nTPM: 33.6
2196 Female, age 79, unknown 40.6
2392 Female, age 94, both hemispheres 34.9
2198 Male, age 80, both hemispheres 34.1
2284 Female, age 91, both hemispheres 33.2
2292 Female, age 85, both hemispheres 32.1
2645 Female, age 72, unknown 32.0
1956 Male, age 74, unknown 31.9
2491 Male, age 75, both hemispheres 31.8
2568 Male, age 61, both hemispheres 31.5
Globus pallidus, externus
nTPM: 33.9
2395 Male, age 75, both hemispheres 42.4
2772 Female, age 79, unknown 34.6
1996 Male, age 80, right hemisphere 31.8
2646 Male, age 61, right hemisphere 30.8
2567 Female, age 72, unknown 29.7
Globus pallidus, internus
nTPM: 33.1
2483 Female, age 94, right hemisphere 36.2
2287 Male, age 75, right hemisphere 33.9
1818 Male, age 74, unknown 33.5
2778 Female, age 91, both hemispheres 33.2
2037 Male, age 80, right hemisphere 32.1
2566 Female, age 72, unknown 32.0
2111 Female, age 85, right hemisphere 30.7
Nucleus accumbens
nTPM: 40.7
1856 Female, age 91, right hemisphere 49.9
2698 Female, age 72, unknown 46.0
1783 Male, age 74, unknown 45.1
2391 Female, age 94, left hemisphere 40.8
1806 Female, age 85, left hemisphere 38.5
2824 Male, age 61, right hemisphere 38.4
2732 Male, age 80, right hemisphere 33.8
2286 Male, age 75, left hemisphere 33.0
Nucleus basalis of Meynert
nTPM: 35.7
2821 Male, age 75, both hemispheres 41.0
2484 Female, age 94, left hemisphere 35.8
2393 Male, age 80, right hemisphere 35.3
2569 Male, age 61, both hemispheres 30.6
Nucleus of the diagonal band
nTPM: 36.8
1812 Female, age 91, both hemispheres 43.1
2775 Male, age 80, right hemisphere 37.9
2195 Female, age 85, both hemispheres 36.3
1979 Male, age 74, unknown 33.8
2029 Male, age 61, right hemisphere 32.8
Olfactory tubercle
nTPM: 35.1
1846 Male, age 80, right hemisphere 36.4
1998 Female, age 91, both hemispheres 35.6
2487 Female, age 94, left hemisphere 34.1
2856 Male, age 75, right hemisphere 34.1
Putamen
nTPM: 39.0
2466 Female, age 79, unknown 45.1
1829 Male, age 74, unknown 43.9
1937 Female, age 91, right hemisphere 40.7
1838 Male, age 80, right hemisphere 40.5
2482 Female, age 94, left hemisphere 38.4
2489 Female, age 72, unknown 33.3
2647 Male, age 75, left hemisphere 31.5
Septal nuclei
nTPM: 35.9
2009 Female, age 91, both hemispheres 39.0
2629 Female, age 94, right hemisphere 39.0
2031 Female, age 72, unknown 36.9
2199 Male, age 80, right hemisphere 36.3
1960 Male, age 74, unknown 35.3
2059 Female, age 85, both hemispheres 32.6
2394 Male, age 61, left hemisphere 32.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 72.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.1
Samples: 246

Max nTPM: 834.7
Min nTPM: 10.0
Std nTPM: 86.8
Median nTPM: 44.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 834.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 548.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 504.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 350.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 330.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 306.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 303.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 297.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 253.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 232.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 226.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 69.1
Samples: 246

Max nTPM: 525.0
Min nTPM: 4.7
Std nTPM: 61.5
Median nTPM: 56.6
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 525.0
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 398.1
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 359.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 348.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 263.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 238.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 228.5
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 206.0
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 200.4
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 185.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 182.1
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Brain - Putamen (basal ganglia)
Average nTPM: 72.0
Samples: 205

Max nTPM: 721.1
Min nTPM: 7.9
Std nTPM: 95.1
Median nTPM: 44.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 721.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 620.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 475.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 437.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 353.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 340.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 327.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 325.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 310.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 305.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 289.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.0
FF:10164-103B2 76 years, female 91.0
Globus pallidus
Scaled Tags Per Million: 33.9
FF:10175-103C4 60 years, female 41.8
FF:10161-103A8 76 years, female 26.0
Nucleus accumbens
Scaled Tags Per Million: 44.6
FF:10037-101F1 23-56 years, mixed 44.6
Putamen
Scaled Tags Per Million: 66.8
FF:10176-103C5 60 years, female 66.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 48.3
Pig sample Sample description nTPM
Caudate
nTPM: 48.3
Samples: 4

Max nTPM: 54.1
Min nTPM: 42.4
Sample A Female 42.4
Sample B Female 44.3
Sample C Male 54.1
Sample D Male 52.5
Putamen
nTPM: 42.3
Samples: 4

Max nTPM: 62.3
Min nTPM: 19.5
Sample A Female 19.5
Sample B Female 44.3
Sample C Male 62.3
Sample D Male 43.1
Septum
nTPM: 41.7
Samples: 4

Max nTPM: 55.5
Min nTPM: 24.3
Sample A Female 55.5
Sample B Female 54.0
Sample C Male 32.8
Sample D Male 24.3
Ventral pallidum
nTPM: 42.7
Samples: 4

Max nTPM: 62.0
Min nTPM: 21.5
Sample A Female 62.0
Sample B Female 45.9
Sample C Male 21.5
Sample D Male 41.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 109.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 109.6
Samples: 4

Max nTPM: 135.2
Min nTPM: 83.3
Sample A Male 128.3
Sample B Male 135.2
Sample C Female 83.3
Sample D Female 91.7
Septum
nTPM: 72.3
Samples: 4

Max nTPM: 85.8
Min nTPM: 60.1
Sample A Male 60.1
Sample B Male 85.8
Sample C Female 65.9
Sample D Female 77.4
Ventral forebrain
nTPM: 68.0
Samples: 4

Max nTPM: 72.8
Min nTPM: 62.9
Sample A Male 66.6
Sample B Male 72.8
Sample C Female 62.9
Sample D Female 69.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
71724666 Antisense, RP_050921_01_D08, Mouse strain C57BL/6J (56 days, male) 2.5
73635771 Antisense, RP_050921_01_D08, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.5
71724666 Antisense, RP_050921_01_D08, Mouse strain C57BL/6J (56 days, male) 1.5
73635771 Antisense, RP_050921_01_D08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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