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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:85.9 nTPM
HPA:85.9 nTPM
GTEx:55.2 nTPM
FANTOM5:145.8 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:10.2 nTPM
Allen mouse:0.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 85.9
Sample id Sample description nTPM
Amygdala
nTPM: 85.9
2695 Female, age 67, right hemisphere 110.1
2814 Male, age 76, right hemisphere 107.6
2514 Male, age 75, right hemisphere 76.3
1987 Female, age 91, left hemisphere 76.2
2517 Female, age 94, left hemisphere 59.4
Basal amygdala
nTPM: 73.1
1955 Male, age 76, both hemispheres 95.7
2609 Male, age 75, right hemisphere 77.1
2110 Male, age 80, left hemisphere 75.0
2827 Female, age 67, right hemisphere 71.9
2243 Female, age 91, right hemisphere 70.0
2685 Female, age 94, left hemisphere 49.2
Central amygdala
nTPM: 76.8
1905 Male, age 76, both hemispheres 97.1
2515 Male, age 75, right hemisphere 80.3
2239 Male, age 80, left hemisphere 73.8
2826 Female, age 94, left hemisphere 69.6
2701 Female, age 91, right hemisphere 63.1
Corticomedial amygdala
nTPM: 66.7
2240 Male, age 76, both hemispheres 91.0
2428 Male, age 75, right hemisphere 75.9
2829 Male, age 80, left hemisphere 68.3
2535 Female, age 67, right hemisphere 56.8
2242 Female, age 91, right hemisphere 55.1
2429 Female, age 94, left hemisphere 53.0
Lateral amygdala
nTPM: 81.3
1883 Male, age 76, both hemispheres 104.4
2830 Female, age 67, right hemisphere 94.3
2516 Male, age 75, right hemisphere 88.3
2256 Male, age 80, left hemisphere 83.2
2255 Female, age 91, right hemisphere 64.0
2534 Female, age 94, left hemisphere 53.9
Stria terminalis, bed nucleus
nTPM: 52.6
1974 Female, age 91, both hemispheres 58.1
2201 Male, age 74, unknown 57.3
2486 Female, age 94, both hemispheres 42.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 55.2
Samples: 152

Max nTPM: 162.7
Min nTPM: 10.3
Std nTPM: 22.9
Median nTPM: 50.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 162.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 120.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 120.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 112.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 103.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 99.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 95.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 95.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 93.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 93.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 92.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 89.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 89.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 87.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 85.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 84.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 82.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 80.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 79.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 78.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 78.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 77.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 77.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 76.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 76.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 72.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 72.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 72.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 71.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 71.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 71.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 71.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 70.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 70.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 68.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 67.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 66.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 66.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 65.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 65.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 62.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 62.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 61.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 61.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 61.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 61.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 60.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 60.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 59.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 59.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 59.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 58.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 57.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 55.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 55.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 55.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 54.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 54.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 54.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 54.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 54.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 53.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 53.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 51.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 51.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 50.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 50.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 50.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 50.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 50.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 49.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 49.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 49.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 49.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 48.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 48.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 47.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 45.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 45.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 44.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 44.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 44.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 44.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 43.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 42.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 42.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 42.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 41.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 41.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 40.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 39.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 39.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 39.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 39.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 39.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 38.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 38.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 38.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 38.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 37.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 37.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 36.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 36.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 35.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 35.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 35.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 35.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 35.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 35.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 34.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 33.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 33.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 33.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 33.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 32.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 32.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 32.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 32.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 31.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 31.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 31.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 30.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 30.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 30.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 29.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 29.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 28.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 28.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 28.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 26.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 25.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 25.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 25.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 25.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 23.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 10.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 145.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 145.8
FF:10151-102I7 76 years, female 145.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.2
Pig sample Sample description nTPM
Amygdala
nTPM: 46.2
Samples: 4

Max nTPM: 65.6
Min nTPM: 32.9
Sample A Female 39.3
Sample B Female 65.6
Sample C Male 47.1
Sample D Male 32.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 10.2
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.0
Sample A Male 9.4
Sample B Male 9.0
Sample C Female 11.4
Sample D Female 11.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.5
69013438 Antisense, RP_050309_02_D07, Mouse strain C57BL/6J (56 days, male) 0.5

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