MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:167.0 nTPM
HPA:167.0 nTPM
GTEx:134.9 nTPM
FANTOM5:410.9 Scaled Tags Per Million
Pig:244.5 nTPM
Mouse:26.8 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 167.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.0
1870 Female, age 42, unknown 167.5
1830 Male, age 51, unknown 159.8
2411 Female, age 72, unknown 152.2
2828 Female, age 72, unknown 146.5
2666 Male, age 74, left hemisphere 146.1
2019 Male, age 18, unknown 145.2
1833 Male, age 53, unknown 138.7
2586 Male, age 75, left hemisphere 109.1
1827 Male, age 72, unknown 97.7
2219 Male, age 76, both hemispheres 77.8
Dorsal raphe nucleus
nTPM: 122.6
2750 Male, age 76, both hemispheres 134.6
1828 Male, age 53, unknown 130.5
2016 Female, age 72, unknown 126.7
2047 Male, age 72, unknown 112.3
2298 Female, age 72, unknown 108.8
Inferior colliculus
nTPM: 116.1
1890 Male, age 53, unknown 132.6
2097 Female, age 72, unknown 127.8
1848 Female, age 42, unknown 106.2
2849 Male, age 72, unknown 97.6
Median raphe nucleus
nTPM: 100.4
2220 Male, age 76, midline 100.4
Pedunculopontine tegmental nucleus
nTPM: 120.8
2338 Male, age 61, both hemispheres 146.4
2334 Male, age 80, both hemispheres 116.3
1921 Female, age 85, both hemispheres 99.6
Periaquaductal grey, anterior
nTPM: 83.7
2502 Female, age 75, unknown 85.9
1947 Male, age 18, unknown 83.6
1795 Male, age 51, unknown 81.5
Periaquaductal grey, dorsal
nTPM: 101.8
2464 Female, age 72, unknown 119.5
1831 Male, age 72, unknown 109.5
2850 Male, age 76, both hemispheres 99.9
1840 Male, age 53, unknown 78.2
Periaquaductal grey, lateral
nTPM: 110.0
2053 Male, age 18, unknown 123.5
2140 Male, age 76, both hemispheres 104.2
2272 Male, age 74, both hemispheres 102.3
Pretectal area
nTPM: 92.4
2316 Male, age 76, right hemisphere 112.9
1815 Male, age 53, unknown 107.6
2825 Male, age 18, unknown 101.8
2273 Male, age 74, both hemispheres 96.7
2667 Female, age 75, unknown 95.4
1817 Female, age 42, unknown 94.1
2407 Male, age 75, both hemispheres 94.1
1944 Female, age 72, unknown 89.5
2007 Male, age 72, unknown 81.7
2224 Female, age 72, unknown 79.9
1816 Male, age 51, unknown 62.3
Red nucleus
nTPM: 167.0
1865 Male, age 51, unknown 204.8
2769 Male, age 72, unknown 190.9
2227 Male, age 72, unknown 190.2
2503 Female, age 72, unknown 178.9
1954 Female, age 42, unknown 174.8
1904 Male, age 53, unknown 174.1
1821 Female, age 72, unknown 173.4
2823 Male, age 76, right hemisphere 165.7
2785 Male, age 18, unknown 152.7
2725 Female, age 75, unknown 148.3
2588 Male, age 74, left hemisphere 129.3
2584 Male, age 75, left hemisphere 120.9
Substantia nigra
nTPM: 128.2
2583 Male, age 75, right hemisphere 155.2
2699 Male, age 18, unknown 144.0
1851 Male, age 51, unknown 138.5
2590 Female, age 75, unknown 133.4
2409 Female, age 72, unknown 129.7
1941 Male, age 53, unknown 125.8
2241 Male, age 72, unknown 117.4
1889 Female, age 72, unknown 114.3
2665 Male, age 74, both hemispheres 113.0
1916 Female, age 42, unknown 110.5
Superior colliculus
nTPM: 113.1
1913 Female, age 42, unknown 178.2
1995 Male, age 72, unknown 158.3
2587 Male, age 74, left hemisphere 131.0
1839 Male, age 51, unknown 108.8
2668 Female, age 75, unknown 106.7
1796 Male, age 53, unknown 99.7
2087 Female, age 72, unknown 94.5
1895 Male, age 76, right hemisphere 89.6
2664 Male, age 75, both hemispheres 89.3
2261 Male, age 18, unknown 75.2
Ventral tegmental area
nTPM: 142.8
2223 Female, age 72, unknown 201.8
2410 Female, age 72, unknown 156.0
1942 Male, age 51, unknown 133.0
1915 Female, age 42, unknown 126.5
2021 Male, age 53, unknown 122.6
2218 Male, age 76, both hemispheres 116.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 134.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.9
Samples: 139

Max nTPM: 351.3
Min nTPM: 34.1
Std nTPM: 50.6
Median nTPM: 133.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 351.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 266.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 241.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 241.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 235.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 234.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 230.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 227.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 220.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 219.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 209.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 410.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 410.9
FF:10158-103A5 76 years, female 410.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 244.5
Pig sample Sample description nTPM
Midbrain
nTPM: 244.5
Samples: 4

Max nTPM: 494.9
Min nTPM: 125.7
Sample A Female 494.9
Sample B Female 191.9
Sample C Male 165.6
Sample D Male 125.7
Periaqueductal gray
nTPM: 170.3
Samples: 3

Max nTPM: 179.7
Min nTPM: 164.3
Sample B Female 179.7
Sample C Male 164.3
Sample D Male 166.9
Substantia nigra
nTPM: 230.2
Samples: 4

Max nTPM: 296.2
Min nTPM: 144.1
Sample A Female 253.1
Sample B Female 144.1
Sample C Male 227.2
Sample D Male 296.2
Superior colliculi
nTPM: 177.2
Samples: 4

Max nTPM: 226.2
Min nTPM: 81.0
Sample A Female 193.5
Sample B Female 81.0
Sample C Male 207.9
Sample D Male 226.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 31.1
Min nTPM: 24.1
Sample A Male 25.6
Sample B Male 24.1
Sample C Female 26.3
Sample D Female 31.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69013438 Antisense, RP_050309_02_D07, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.