MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA:26.5 nTPM
GTEx:16.9 nTPM
FANTOM5:26.6 Scaled Tags Per Million
Mouse:24.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.2
2411 Female, age 72, unknown 25.9
1827 Male, age 72, unknown 25.2
1870 Female, age 42, unknown 24.8
2019 Male, age 18, unknown 24.0
2219 Male, age 76, both hemispheres 24.0
2586 Male, age 75, left hemisphere 24.0
2666 Male, age 74, left hemisphere 23.7
2828 Female, age 72, unknown 23.6
1833 Male, age 53, unknown 23.4
1830 Male, age 51, unknown 23.0
Dorsal raphe nucleus
nTPM: 25.5
2047 Male, age 72, unknown 27.2
2298 Female, age 72, unknown 26.7
2750 Male, age 76, both hemispheres 25.3
1828 Male, age 53, unknown 24.5
2016 Female, age 72, unknown 23.7
Inferior colliculus
nTPM: 24.4
2097 Female, age 72, unknown 25.6
1890 Male, age 53, unknown 24.7
1848 Female, age 42, unknown 24.2
2849 Male, age 72, unknown 23.2
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Pedunculopontine tegmental nucleus
nTPM: 24.9
1921 Female, age 85, both hemispheres 25.2
2338 Male, age 61, both hemispheres 25.1
2334 Male, age 80, both hemispheres 24.5
Periaquaductal grey, anterior
nTPM: 24.6
1947 Male, age 18, unknown 25.5
1795 Male, age 51, unknown 24.6
2502 Female, age 75, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 24.1
1840 Male, age 53, unknown 25.3
2464 Female, age 72, unknown 24.4
2850 Male, age 76, both hemispheres 23.4
1831 Male, age 72, unknown 23.2
Periaquaductal grey, lateral
nTPM: 23.6
2053 Male, age 18, unknown 24.2
2272 Male, age 74, both hemispheres 23.8
2140 Male, age 76, both hemispheres 22.8
Pretectal area
nTPM: 24.7
1816 Male, age 51, unknown 26.0
1817 Female, age 42, unknown 25.8
2224 Female, age 72, unknown 25.4
2667 Female, age 75, unknown 25.3
2007 Male, age 72, unknown 24.9
2273 Male, age 74, both hemispheres 24.9
2825 Male, age 18, unknown 24.7
1944 Female, age 72, unknown 24.5
1815 Male, age 53, unknown 24.3
2407 Male, age 75, both hemispheres 22.9
2316 Male, age 76, right hemisphere 22.4
Red nucleus
nTPM: 24.1
1821 Female, age 72, unknown 26.0
2725 Female, age 75, unknown 25.3
1954 Female, age 42, unknown 25.1
2503 Female, age 72, unknown 25.0
2588 Male, age 74, left hemisphere 25.0
1865 Male, age 51, unknown 23.8
1904 Male, age 53, unknown 23.5
2769 Male, age 72, unknown 23.5
2785 Male, age 18, unknown 23.4
2227 Male, age 72, unknown 23.3
2823 Male, age 76, right hemisphere 22.6
2584 Male, age 75, left hemisphere 22.2
Substantia nigra
nTPM: 26.5
2241 Male, age 72, unknown 29.9
2409 Female, age 72, unknown 28.0
1916 Female, age 42, unknown 27.7
1941 Male, age 53, unknown 27.3
1851 Male, age 51, unknown 27.2
1889 Female, age 72, unknown 26.0
2590 Female, age 75, unknown 25.5
2665 Male, age 74, both hemispheres 24.8
2583 Male, age 75, right hemisphere 24.6
2699 Male, age 18, unknown 24.3
Superior colliculus
nTPM: 23.8
1895 Male, age 76, right hemisphere 25.9
1796 Male, age 53, unknown 25.2
2261 Male, age 18, unknown 24.9
2087 Female, age 72, unknown 24.1
2587 Male, age 74, left hemisphere 23.8
1839 Male, age 51, unknown 23.6
2668 Female, age 75, unknown 23.5
1913 Female, age 42, unknown 23.0
2664 Male, age 75, both hemispheres 22.3
1995 Male, age 72, unknown 22.0
Ventral tegmental area
nTPM: 25.9
1915 Female, age 42, unknown 27.2
2410 Female, age 72, unknown 27.0
2218 Male, age 76, both hemispheres 25.7
1942 Male, age 51, unknown 25.5
2223 Female, age 72, unknown 25.3
2021 Male, age 53, unknown 24.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 139

Max nTPM: 25.0
Min nTPM: 11.1
Std nTPM: 2.6
Median nTPM: 16.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 23.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 22.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 21.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 21.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 21.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.6
FF:10158-103A5 76 years, female 26.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 26.2
Min nTPM: 22.6
Sample A Male 24.0
Sample B Male 25.8
Sample C Female 26.2
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69289303 Antisense, RP_050407_02_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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