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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:70.1 nTPM
GTEx:68.1 nTPM
FANTOM5:75.5 Scaled Tags Per Million
Pig:70.6 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 70.1
Sample id Sample description nTPM
Putamen
nTPM: 70.1
2647 Male, age 75, left hemisphere 82.0
2489 Female, age 72, unknown 76.1
1829 Male, age 74, unknown 75.8
2466 Female, age 79, unknown 68.0
2482 Female, age 94, left hemisphere 67.2
1937 Female, age 91, right hemisphere 62.6
1838 Male, age 80, right hemisphere 59.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 68.1
Samples: 205

Max nTPM: 163.0
Min nTPM: 33.8
Std nTPM: 17.3
Median nTPM: 65.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 163.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 121.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 112.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 111.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 110.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 106.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 103.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 102.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 101.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 101.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 99.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 94.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 93.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 93.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 92.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 92.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 92.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 91.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 91.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 89.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 88.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 88.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 88.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 88.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 87.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 86.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 86.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 86.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 86.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 84.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 84.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 84.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 84.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 83.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 83.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 81.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 81.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 81.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 80.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 80.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 79.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 79.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 78.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 78.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 78.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 78.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 78.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 78.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 78.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 77.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 77.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 76.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 76.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 76.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 76.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 75.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 75.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 75.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 75.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 74.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 74.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 74.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 74.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 74.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 73.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 73.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 72.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 72.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 72.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 72.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 72.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 71.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 71.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 71.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 71.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 71.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 71.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 71.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 71.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 70.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 70.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 70.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 70.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 70.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 70.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 70.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 70.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 70.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 69.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 68.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 68.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 68.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 67.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 67.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 67.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 67.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 67.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 67.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 66.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 66.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 66.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 66.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 65.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 65.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 65.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 65.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 65.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 64.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 64.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 64.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 64.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 64.3
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 64.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 64.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 63.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 63.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 63.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 63.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 63.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 63.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 63.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 63.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 62.9
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 62.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 62.8
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 62.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 62.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 62.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 61.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 61.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 61.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 61.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 61.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 61.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 60.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 60.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 60.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 60.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 60.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 59.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 59.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 59.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 59.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 59.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 59.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 59.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 59.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 59.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 59.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 59.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 58.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 58.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 57.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 57.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 57.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 56.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 56.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 55.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 55.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 55.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 55.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 55.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 54.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 54.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 53.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 53.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 53.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 53.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 52.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 52.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 52.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 51.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 51.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 51.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 51.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 50.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 50.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 50.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 50.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 49.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 49.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 48.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 48.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 48.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 47.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 47.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 47.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 47.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 46.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 44.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 44.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 43.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 42.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 42.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 42.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 42.0
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 41.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 41.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 40.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 39.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 38.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 37.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 36.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 33.8
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 75.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 75.5
FF:10176-103C5 60 years, female 75.5

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.6
Pig sample Sample description nTPM
Putamen
nTPM: 70.6
Samples: 4

Max nTPM: 82.1
Min nTPM: 54.5
Sample A Female 76.4
Sample B Female 54.5
Sample C Male 69.4
Sample D Male 82.1

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