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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:152.7 nTPM
HPA:152.7 nTPM
GTEx:169.1 nTPM
FANTOM5:478.2 Scaled Tags Per Million
Pig:145.3 nTPM
Mouse:72.7 nTPM
Allen mouse:1.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 152.7
Sample id Sample description nTPM
Amygdala
nTPM: 152.7
1987 Female, age 91, left hemisphere 173.2
2514 Male, age 75, right hemisphere 154.7
2814 Male, age 76, right hemisphere 147.2
2517 Female, age 94, left hemisphere 145.4
2695 Female, age 67, right hemisphere 143.0
Basal amygdala
nTPM: 133.1
1955 Male, age 76, both hemispheres 146.4
2110 Male, age 80, left hemisphere 144.2
2609 Male, age 75, right hemisphere 138.1
2243 Female, age 91, right hemisphere 135.1
2685 Female, age 94, left hemisphere 127.8
2827 Female, age 67, right hemisphere 106.8
Central amygdala
nTPM: 144.2
2515 Male, age 75, right hemisphere 162.6
2239 Male, age 80, left hemisphere 145.2
1905 Male, age 76, both hemispheres 143.0
2701 Female, age 91, right hemisphere 141.4
2826 Female, age 94, left hemisphere 128.6
Corticomedial amygdala
nTPM: 138.4
2242 Female, age 91, right hemisphere 149.0
2240 Male, age 76, both hemispheres 145.4
2428 Male, age 75, right hemisphere 143.4
2829 Male, age 80, left hemisphere 142.3
2429 Female, age 94, left hemisphere 137.0
2535 Female, age 67, right hemisphere 113.1
Lateral amygdala
nTPM: 132.3
2256 Male, age 80, left hemisphere 152.8
1883 Male, age 76, both hemispheres 138.9
2255 Female, age 91, right hemisphere 133.8
2516 Male, age 75, right hemisphere 132.2
2534 Female, age 94, left hemisphere 128.4
2830 Female, age 67, right hemisphere 107.6
Stria terminalis, bed nucleus
nTPM: 130.5
2201 Male, age 74, unknown 131.2
2486 Female, age 94, both hemispheres 130.4
1974 Female, age 91, both hemispheres 129.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 169.1
Samples: 152

Max nTPM: 533.7
Min nTPM: 69.1
Std nTPM: 74.3
Median nTPM: 152.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 533.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 435.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 395.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 382.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 350.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 334.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 324.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 318.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 295.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 294.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 282.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 268.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 266.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 255.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 253.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 253.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 249.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 246.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 244.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 242.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 237.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 235.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 230.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 230.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 228.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 228.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 226.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 225.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 225.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 218.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 217.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 213.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 212.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 211.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 211.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 210.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 205.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 204.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 202.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 202.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 199.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 198.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 197.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 197.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 194.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 191.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 191.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 190.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 188.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 187.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 186.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 186.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 185.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 185.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 184.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 184.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 181.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 175.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 174.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 171.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 171.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 167.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 166.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 165.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 163.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 162.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 161.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 160.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 158.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 155.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 155.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 155.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 155.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 154.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 154.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 153.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 151.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 151.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 151.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 151.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 150.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 147.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 146.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 146.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 145.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 141.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 140.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 140.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 139.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 138.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 136.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 136.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 136.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 134.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 134.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 133.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 133.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 132.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 129.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 126.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 126.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 126.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 125.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 125.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 124.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 124.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 124.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 121.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 120.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 117.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 114.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 113.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 112.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 111.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 111.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 110.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 109.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 109.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 108.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 107.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 106.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 104.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 103.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 103.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 103.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 101.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 100.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 97.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 94.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 92.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 92.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 88.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 87.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 85.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 82.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 80.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 78.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 75.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 75.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 74.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 74.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 71.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 69.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 478.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 478.2
FF:10151-102I7 76 years, female 478.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.3
Pig sample Sample description nTPM
Amygdala
nTPM: 145.3
Samples: 4

Max nTPM: 164.7
Min nTPM: 128.5
Sample A Female 164.7
Sample B Female 151.9
Sample C Male 128.5
Sample D Male 136.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 72.7
Samples: 4

Max nTPM: 76.5
Min nTPM: 67.1
Sample A Male 67.1
Sample B Male 73.6
Sample C Female 76.5
Sample D Female 73.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.4
74822928 Antisense, RP_060321_01_A01, Mouse strain C57BL/6J (56 days, male) 1.4

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