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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:180.8 nTPM
HPA:180.8 nTPM
GTEx:111.2 nTPM
FANTOM5:905.1 Scaled Tags Per Million
Pig:310.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 180.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 177.3
1981 Female, age 72, midline 209.1
2048 Male, age 55, midline 207.6
2565 Male, age 75, midline 161.3
2816 Male, age 47, midline 157.6
2194 Female, age 79, both hemispheres 151.1
Cervical spinal cord, dorsal horn
nTPM: 180.8
2721 Male, age 90, both hemispheres 196.6
2069 Male, age 47, both hemispheres 191.9
2173 Female, age 72, unknown 191.1
2296 Male, age 66, both hemispheres 182.7
1877 Male, age 55, unknown 165.0
2297 Male, age 75, both hemispheres 157.3
Cervical spinal cord, ventral horn
nTPM: 164.4
2098 Female, age 72, unknown 248.5
2809 Male, age 90, both hemispheres 175.4
2295 Male, age 66, both hemispheres 156.8
2480 Male, age 75, both hemispheres 140.8
2068 Male, age 55, unknown 139.1
2820 Female, age 79, both hemispheres 125.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 111.2
Samples: 159

Max nTPM: 417.2
Min nTPM: 51.7
Std nTPM: 54.3
Median nTPM: 98.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 417.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 382.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 372.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 298.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 236.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 226.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 205.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 204.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 186.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 185.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 179.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 174.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 174.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 173.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 172.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 167.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 165.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 165.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 154.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 154.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 146.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 146.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 145.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 139.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 139.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 138.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 134.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 134.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 133.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 132.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 132.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 131.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 128.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 127.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 126.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 126.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 126.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 125.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 125.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 124.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 123.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 123.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 122.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 122.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 120.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 120.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 119.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 118.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 117.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 117.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 116.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 116.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 115.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 113.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 111.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 111.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 111.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 111.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 110.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 108.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 107.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 107.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 106.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 105.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 104.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 103.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 103.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 101.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 100.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 100.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 100.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 100.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 100.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 100.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 100.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 99.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 98.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 98.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 98.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 97.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 96.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 96.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 96.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 95.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 95.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 94.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 94.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 93.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 93.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 93.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 93.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 92.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 91.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 91.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 90.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 90.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 89.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 89.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 89.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 88.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 88.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 88.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 88.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 88.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 87.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 86.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 86.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 85.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 85.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 84.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 84.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 83.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 83.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 83.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 83.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 82.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 81.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 81.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 80.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 80.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 80.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 79.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 79.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 79.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 78.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 78.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 78.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 77.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 76.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 75.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 75.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 74.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 74.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 72.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 71.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 71.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 70.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 70.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 66.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 64.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 62.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 62.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 62.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 60.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 60.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 59.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 59.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 58.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 56.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 56.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 55.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 55.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 54.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 51.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 905.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 905.1
FF:10181-103D1 60 years, female 996.4
FF:10159-103A6 76 years, female 813.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 310.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 289.3
Samples: 4

Max nTPM: 366.3
Min nTPM: 215.5
Sample A Female 215.5
Sample B Female 317.2
Sample C Male 366.3
Sample D Male 258.0
Ventral spinal cord
nTPM: 310.9
Samples: 4

Max nTPM: 333.3
Min nTPM: 298.8
Sample A Female 310.2
Sample B Female 298.8
Sample C Male 301.4
Sample D Male 333.3

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