MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:170.9 nTPM
HPA:170.9 nTPM
GTEx:156.9 nTPM
FANTOM5:373.0 Scaled Tags Per Million
Pig:222.3 nTPM
Mouse:92.8 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 170.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.5
2586 Male, age 75, left hemisphere 154.0
2828 Female, age 72, unknown 154.0
1870 Female, age 42, unknown 152.0
1833 Male, age 53, unknown 142.0
1827 Male, age 72, unknown 139.0
1830 Male, age 51, unknown 135.5
2411 Female, age 72, unknown 131.2
2666 Male, age 74, left hemisphere 125.5
2019 Male, age 18, unknown 124.5
2219 Male, age 76, both hemispheres 117.1
Dorsal raphe nucleus
nTPM: 157.6
2016 Female, age 72, unknown 176.0
2298 Female, age 72, unknown 164.4
1828 Male, age 53, unknown 161.3
2047 Male, age 72, unknown 151.0
2750 Male, age 76, both hemispheres 135.3
Inferior colliculus
nTPM: 152.5
1848 Female, age 42, unknown 161.4
2849 Male, age 72, unknown 154.7
2097 Female, age 72, unknown 150.6
1890 Male, age 53, unknown 143.3
Median raphe nucleus
nTPM: 144.3
2220 Male, age 76, midline 144.3
Pedunculopontine tegmental nucleus
nTPM: 148.7
2338 Male, age 61, both hemispheres 156.5
2334 Male, age 80, both hemispheres 153.4
1921 Female, age 85, both hemispheres 136.3
Periaquaductal grey, anterior
nTPM: 151.9
1795 Male, age 51, unknown 155.2
1947 Male, age 18, unknown 154.0
2502 Female, age 75, unknown 146.5
Periaquaductal grey, dorsal
nTPM: 165.5
2850 Male, age 76, both hemispheres 192.0
1840 Male, age 53, unknown 168.4
1831 Male, age 72, unknown 153.0
2464 Female, age 72, unknown 148.5
Periaquaductal grey, lateral
nTPM: 170.9
2140 Male, age 76, both hemispheres 178.5
2053 Male, age 18, unknown 170.1
2272 Male, age 74, both hemispheres 164.1
Pretectal area
nTPM: 149.5
2273 Male, age 74, both hemispheres 184.6
2224 Female, age 72, unknown 168.6
2316 Male, age 76, right hemisphere 156.9
2825 Male, age 18, unknown 156.3
2667 Female, age 75, unknown 153.3
1944 Female, age 72, unknown 144.7
2407 Male, age 75, both hemispheres 144.6
1817 Female, age 42, unknown 142.3
1815 Male, age 53, unknown 137.2
1816 Male, age 51, unknown 134.5
2007 Male, age 72, unknown 121.3
Red nucleus
nTPM: 144.9
2725 Female, age 75, unknown 159.8
1954 Female, age 42, unknown 158.1
1821 Female, age 72, unknown 155.5
2769 Male, age 72, unknown 152.5
2227 Male, age 72, unknown 150.9
2503 Female, age 72, unknown 150.8
1865 Male, age 51, unknown 150.7
1904 Male, age 53, unknown 144.3
2823 Male, age 76, right hemisphere 143.3
2785 Male, age 18, unknown 127.5
2588 Male, age 74, left hemisphere 122.8
2584 Male, age 75, left hemisphere 122.6
Substantia nigra
nTPM: 148.1
2699 Male, age 18, unknown 190.3
1916 Female, age 42, unknown 160.4
2241 Male, age 72, unknown 155.0
1851 Male, age 51, unknown 151.3
2409 Female, age 72, unknown 145.5
1889 Female, age 72, unknown 142.7
1941 Male, age 53, unknown 138.4
2590 Female, age 75, unknown 138.2
2583 Male, age 75, right hemisphere 129.8
2665 Male, age 74, both hemispheres 129.7
Superior colliculus
nTPM: 145.4
1995 Male, age 72, unknown 163.1
1796 Male, age 53, unknown 154.6
1913 Female, age 42, unknown 152.7
2587 Male, age 74, left hemisphere 148.4
1839 Male, age 51, unknown 146.4
2087 Female, age 72, unknown 143.4
2664 Male, age 75, both hemispheres 138.7
2668 Female, age 75, unknown 138.3
2261 Male, age 18, unknown 137.0
1895 Male, age 76, right hemisphere 131.3
Ventral tegmental area
nTPM: 149.1
1915 Female, age 42, unknown 160.6
2021 Male, age 53, unknown 152.5
2218 Male, age 76, both hemispheres 147.2
2223 Female, age 72, unknown 147.0
1942 Male, age 51, unknown 146.7
2410 Female, age 72, unknown 140.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 156.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.9
Samples: 139

Max nTPM: 659.5
Min nTPM: 37.1
Std nTPM: 89.8
Median nTPM: 133.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 659.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 543.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 422.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 378.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 371.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 364.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 348.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 325.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 321.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 319.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 295.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 373.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 373.0
FF:10158-103A5 76 years, female 373.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 222.3
Pig sample Sample description nTPM
Midbrain
nTPM: 222.3
Samples: 4

Max nTPM: 425.3
Min nTPM: 128.0
Sample A Female 425.3
Sample B Female 192.6
Sample C Male 143.2
Sample D Male 128.0
Periaqueductal gray
nTPM: 203.5
Samples: 3

Max nTPM: 229.1
Min nTPM: 189.7
Sample B Female 189.7
Sample C Male 229.1
Sample D Male 191.8
Substantia nigra
nTPM: 218.6
Samples: 4

Max nTPM: 243.2
Min nTPM: 195.0
Sample A Female 243.2
Sample B Female 211.4
Sample C Male 195.0
Sample D Male 224.9
Superior colliculi
nTPM: 163.5
Samples: 4

Max nTPM: 191.1
Min nTPM: 141.7
Sample A Female 191.1
Sample B Female 141.7
Sample C Male 162.2
Sample D Male 159.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.8
Samples: 4

Max nTPM: 99.8
Min nTPM: 88.0
Sample A Male 99.8
Sample B Male 91.6
Sample C Female 88.0
Sample D Female 91.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
74822928 Antisense, RP_060321_01_A01, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.