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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:169.5 nTPM
HPA:169.5 nTPM
GTEx:126.1 nTPM
FANTOM5:234.7 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:95.7 nTPM
Allen mouse:2.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 169.5
Sample id Sample description nTPM
Amygdala
nTPM: 169.5
1987 Female, age 91, left hemisphere 178.4
2514 Male, age 75, right hemisphere 173.6
2695 Female, age 67, right hemisphere 165.6
2517 Female, age 94, left hemisphere 165.0
2814 Male, age 76, right hemisphere 164.9
Basal amygdala
nTPM: 165.5
2609 Male, age 75, right hemisphere 179.5
2110 Male, age 80, left hemisphere 169.2
1955 Male, age 76, both hemispheres 168.9
2243 Female, age 91, right hemisphere 165.0
2685 Female, age 94, left hemisphere 163.3
2827 Female, age 67, right hemisphere 147.2
Central amygdala
nTPM: 165.0
2515 Male, age 75, right hemisphere 173.0
2826 Female, age 94, left hemisphere 164.7
1905 Male, age 76, both hemispheres 164.2
2239 Male, age 80, left hemisphere 161.5
2701 Female, age 91, right hemisphere 161.4
Corticomedial amygdala
nTPM: 164.4
2428 Male, age 75, right hemisphere 178.7
2240 Male, age 76, both hemispheres 168.7
2829 Male, age 80, left hemisphere 165.5
2242 Female, age 91, right hemisphere 165.2
2429 Female, age 94, left hemisphere 160.5
2535 Female, age 67, right hemisphere 147.5
Lateral amygdala
nTPM: 161.2
2516 Male, age 75, right hemisphere 174.4
2256 Male, age 80, left hemisphere 164.2
1883 Male, age 76, both hemispheres 161.4
2255 Female, age 91, right hemisphere 161.2
2534 Female, age 94, left hemisphere 160.4
2830 Female, age 67, right hemisphere 145.8
Stria terminalis, bed nucleus
nTPM: 158.2
2201 Male, age 74, unknown 163.4
1974 Female, age 91, both hemispheres 156.5
2486 Female, age 94, both hemispheres 154.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 126.1
Samples: 152

Max nTPM: 345.6
Min nTPM: 34.7
Std nTPM: 48.7
Median nTPM: 119.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 345.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 270.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 265.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 254.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 238.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 226.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 221.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 217.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 216.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 216.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 212.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 210.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 200.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 197.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 186.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 185.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 182.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 177.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 176.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 175.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 170.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 169.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 165.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 165.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 164.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 163.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 163.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 162.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 162.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 161.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 159.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 159.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 158.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 154.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 154.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 151.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 150.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 150.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 149.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 147.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 147.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 146.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 144.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 143.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 143.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 143.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 141.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 137.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 135.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 134.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 134.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 134.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 132.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 131.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 131.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 128.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 128.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 127.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 127.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 127.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 127.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 126.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 125.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 125.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 124.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 123.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 123.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 122.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 121.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 120.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 120.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 119.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 119.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 117.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 117.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 113.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 113.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 112.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 112.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 112.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 107.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 107.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 106.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 106.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 106.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 106.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 106.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 105.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 103.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 103.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 103.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 101.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 100.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 100.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 99.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 98.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 98.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 97.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 97.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 95.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 94.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 93.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 92.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 92.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 84.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 83.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 83.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 82.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 81.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 78.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 77.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 76.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 76.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 76.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 76.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 75.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 71.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 70.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 70.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 70.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 70.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 65.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 56.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 55.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 52.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 52.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 47.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 34.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 234.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 234.7
FF:10151-102I7 76 years, female 234.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.2
Pig sample Sample description nTPM
Amygdala
nTPM: 29.2
Samples: 4

Max nTPM: 35.0
Min nTPM: 24.0
Sample A Female 35.0
Sample B Female 31.7
Sample C Male 24.0
Sample D Male 26.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 95.7
Samples: 4

Max nTPM: 112.6
Min nTPM: 79.6
Sample A Male 79.6
Sample B Male 86.0
Sample C Female 104.6
Sample D Female 112.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
686199 Antisense, RP_040916_01_A07, Mouse strain C57BL/6J (56 days, male) 2.1

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