MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:198.3 nTPM
HPA:198.3 nTPM
GTEx:152.4 nTPM
FANTOM5:205.2 Scaled Tags Per Million
Pig:86.5 nTPM
Mouse:78.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 198.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 166.6
2411 Female, age 72, unknown 180.5
2586 Male, age 75, left hemisphere 173.0
1833 Male, age 53, unknown 172.8
2828 Female, age 72, unknown 167.7
1870 Female, age 42, unknown 167.1
1827 Male, age 72, unknown 165.5
1830 Male, age 51, unknown 165.3
2219 Male, age 76, both hemispheres 165.2
2019 Male, age 18, unknown 156.3
2666 Male, age 74, left hemisphere 152.8
Dorsal raphe nucleus
nTPM: 193.3
2298 Female, age 72, unknown 205.6
2016 Female, age 72, unknown 203.8
1828 Male, age 53, unknown 195.0
2047 Male, age 72, unknown 192.3
2750 Male, age 76, both hemispheres 169.7
Inferior colliculus
nTPM: 197.7
2097 Female, age 72, unknown 210.3
1890 Male, age 53, unknown 201.3
1848 Female, age 42, unknown 190.2
2849 Male, age 72, unknown 189.1
Median raphe nucleus
nTPM: 170.1
2220 Male, age 76, midline 170.1
Pedunculopontine tegmental nucleus
nTPM: 179.1
1921 Female, age 85, both hemispheres 186.7
2334 Male, age 80, both hemispheres 181.8
2338 Male, age 61, both hemispheres 168.7
Periaquaductal grey, anterior
nTPM: 174.6
2502 Female, age 75, unknown 187.4
1947 Male, age 18, unknown 168.9
1795 Male, age 51, unknown 167.6
Periaquaductal grey, dorsal
nTPM: 198.3
1840 Male, age 53, unknown 216.9
2850 Male, age 76, both hemispheres 200.5
2464 Female, age 72, unknown 195.8
1831 Male, age 72, unknown 179.7
Periaquaductal grey, lateral
nTPM: 182.2
2140 Male, age 76, both hemispheres 189.0
2053 Male, age 18, unknown 187.8
2272 Male, age 74, both hemispheres 169.7
Pretectal area
nTPM: 170.4
2273 Male, age 74, both hemispheres 189.1
2667 Female, age 75, unknown 179.9
2224 Female, age 72, unknown 176.0
2825 Male, age 18, unknown 175.9
2316 Male, age 76, right hemisphere 171.0
1944 Female, age 72, unknown 168.9
2407 Male, age 75, both hemispheres 168.1
1816 Male, age 51, unknown 167.9
1817 Female, age 42, unknown 164.8
1815 Male, age 53, unknown 159.4
2007 Male, age 72, unknown 153.3
Red nucleus
nTPM: 166.6
1821 Female, age 72, unknown 176.1
1954 Female, age 42, unknown 173.7
2503 Female, age 72, unknown 170.2
2769 Male, age 72, unknown 170.0
2823 Male, age 76, right hemisphere 170.0
2227 Male, age 72, unknown 169.6
1904 Male, age 53, unknown 165.8
2725 Female, age 75, unknown 165.4
1865 Male, age 51, unknown 165.3
2588 Male, age 74, left hemisphere 159.4
2584 Male, age 75, left hemisphere 158.4
2785 Male, age 18, unknown 155.4
Substantia nigra
nTPM: 179.4
2699 Male, age 18, unknown 207.5
2241 Male, age 72, unknown 199.5
1916 Female, age 42, unknown 184.2
1851 Male, age 51, unknown 178.5
2409 Female, age 72, unknown 176.5
2590 Female, age 75, unknown 173.4
1889 Female, age 72, unknown 172.7
1941 Male, age 53, unknown 168.4
2665 Male, age 74, both hemispheres 166.5
2583 Male, age 75, right hemisphere 166.3
Superior colliculus
nTPM: 174.5
1995 Male, age 72, unknown 193.0
2664 Male, age 75, both hemispheres 183.9
1913 Female, age 42, unknown 178.6
1839 Male, age 51, unknown 176.6
2587 Male, age 74, left hemisphere 175.6
2261 Male, age 18, unknown 174.0
1796 Male, age 53, unknown 171.2
2087 Female, age 72, unknown 170.3
1895 Male, age 76, right hemisphere 162.2
2668 Female, age 75, unknown 159.3
Ventral tegmental area
nTPM: 176.5
1942 Male, age 51, unknown 183.3
1915 Female, age 42, unknown 179.0
2021 Male, age 53, unknown 177.0
2410 Female, age 72, unknown 175.3
2218 Male, age 76, both hemispheres 174.2
2223 Female, age 72, unknown 169.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 152.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.4
Samples: 139

Max nTPM: 370.8
Min nTPM: 39.4
Std nTPM: 66.5
Median nTPM: 143.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 370.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 347.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 316.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 304.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 299.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 284.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 283.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 271.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 267.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 265.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 262.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 205.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 205.2
FF:10158-103A5 76 years, female 205.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.5
Pig sample Sample description nTPM
Midbrain
nTPM: 86.6
Samples: 4

Max nTPM: 164.2
Min nTPM: 54.3
Sample A Female 164.2
Sample B Female 70.8
Sample C Male 56.9
Sample D Male 54.3
Periaqueductal gray
nTPM: 66.4
Samples: 3

Max nTPM: 68.9
Min nTPM: 61.6
Sample B Female 61.6
Sample C Male 68.9
Sample D Male 68.7
Substantia nigra
nTPM: 83.7
Samples: 4

Max nTPM: 105.0
Min nTPM: 72.4
Sample A Female 105.0
Sample B Female 79.2
Sample C Male 72.4
Sample D Male 78.1
Superior colliculi
nTPM: 83.3
Samples: 4

Max nTPM: 101.6
Min nTPM: 76.8
Sample A Female 101.6
Sample B Female 77.9
Sample C Male 76.8
Sample D Male 76.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 78.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 84.7
Min nTPM: 70.7
Sample A Male 80.6
Sample B Male 70.7
Sample C Female 76.3
Sample D Female 84.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
686199 Antisense, RP_040916_01_A07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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