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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:17.8 nTPM
GTEx:31.9 nTPM
FANTOM5:79.1 Scaled Tags Per Million
Pig:30.7 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 17.8
Sample id Sample description nTPM
Putamen
nTPM: 17.8
2489 Female, age 72, unknown 25.7
2466 Female, age 79, unknown 19.3
2482 Female, age 94, left hemisphere 18.5
1937 Female, age 91, right hemisphere 17.2
1838 Male, age 80, right hemisphere 15.2
2647 Male, age 75, left hemisphere 14.8
1829 Male, age 74, unknown 13.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 31.9
Samples: 205

Max nTPM: 89.1
Min nTPM: 6.6
Std nTPM: 17.2
Median nTPM: 27.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 89.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 78.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 78.7
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 77.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 72.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 71.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 71.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 69.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 69.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 65.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 65.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 64.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 63.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 62.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 61.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 60.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 58.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 56.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 55.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 55.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 55.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 54.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 54.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 53.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 52.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 51.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 51.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 51.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 50.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 50.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 50.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 50.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 49.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 49.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 49.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 49.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 49.4
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 49.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 49.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 48.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 48.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 47.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 46.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 46.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 46.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 45.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 45.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 45.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 44.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 44.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 44.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 44.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 44.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 44.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 43.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 42.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 42.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 42.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 42.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 41.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 40.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 40.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 40.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 39.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 38.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 38.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 38.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 37.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 37.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 36.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 36.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 36.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 36.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 36.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 35.7
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 34.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 34.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 34.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 34.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 34.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 34.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 33.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 33.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 33.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 32.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 31.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 31.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 31.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 30.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 30.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 30.0
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 29.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 29.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 29.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 29.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 29.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 29.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 29.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 28.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 28.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 28.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 28.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 27.9
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 27.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 27.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 26.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 26.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 26.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 26.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 26.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 26.0
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 25.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 25.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 25.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 25.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 25.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 24.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 24.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 24.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 24.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 24.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 23.9
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 23.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 23.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 23.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 23.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 23.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 23.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 22.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 22.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 22.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 22.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 21.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 21.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 21.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 21.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 21.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 21.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 21.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 21.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 21.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 21.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 20.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 20.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 20.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 19.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 19.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 19.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 19.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 19.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 19.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 19.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 19.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 18.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 18.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 18.5
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 18.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 18.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 17.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 17.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 16.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 16.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 16.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 16.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 16.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 16.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 16.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 15.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 15.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 14.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 14.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 14.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 14.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 14.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 13.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 13.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 13.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 13.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 13.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 13.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 13.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 12.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 12.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 12.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 11.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 11.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 11.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 11.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 11.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 11.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 10.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 10.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 10.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 10.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 9.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 9.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 9.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 9.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 9.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 8.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 8.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 8.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 8.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 8.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 6.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 79.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 79.1
FF:10176-103C5 60 years, female 79.1

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.7
Pig sample Sample description nTPM
Putamen
nTPM: 30.7
Samples: 4

Max nTPM: 34.7
Min nTPM: 25.2
Sample A Female 34.7
Sample B Female 25.2
Sample C Male 32.0
Sample D Male 31.0

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