MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.8 nTPM
HPA:83.8 nTPM
GTEx:57.0 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:60.5 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.9
2586 Male, age 75, left hemisphere 89.6
2019 Male, age 18, unknown 81.7
2411 Female, age 72, unknown 81.3
1827 Male, age 72, unknown 79.4
2666 Male, age 74, left hemisphere 79.2
1833 Male, age 53, unknown 79.1
2828 Female, age 72, unknown 78.6
2219 Male, age 76, both hemispheres 77.2
1830 Male, age 51, unknown 76.8
1870 Female, age 42, unknown 76.3
Dorsal raphe nucleus
nTPM: 79.6
1828 Male, age 53, unknown 83.1
2047 Male, age 72, unknown 81.4
2016 Female, age 72, unknown 79.2
2750 Male, age 76, both hemispheres 77.5
2298 Female, age 72, unknown 76.9
Inferior colliculus
nTPM: 79.2
1890 Male, age 53, unknown 81.6
2097 Female, age 72, unknown 80.6
1848 Female, age 42, unknown 78.3
2849 Male, age 72, unknown 76.3
Median raphe nucleus
nTPM: 77.6
2220 Male, age 76, midline 77.6
Pedunculopontine tegmental nucleus
nTPM: 75.1
1921 Female, age 85, both hemispheres 79.0
2334 Male, age 80, both hemispheres 75.3
2338 Male, age 61, both hemispheres 71.1
Periaquaductal grey, anterior
nTPM: 79.1
1947 Male, age 18, unknown 80.2
2502 Female, age 75, unknown 79.7
1795 Male, age 51, unknown 77.3
Periaquaductal grey, dorsal
nTPM: 77.5
1840 Male, age 53, unknown 79.3
1831 Male, age 72, unknown 79.0
2464 Female, age 72, unknown 76.7
2850 Male, age 76, both hemispheres 74.9
Periaquaductal grey, lateral
nTPM: 76.3
2140 Male, age 76, both hemispheres 76.8
2053 Male, age 18, unknown 76.6
2272 Male, age 74, both hemispheres 75.5
Pretectal area
nTPM: 79.1
1944 Female, age 72, unknown 83.1
2007 Male, age 72, unknown 82.6
1817 Female, age 42, unknown 82.2
1816 Male, age 51, unknown 81.4
1815 Male, age 53, unknown 80.6
2667 Female, age 75, unknown 78.4
2407 Male, age 75, both hemispheres 77.8
2825 Male, age 18, unknown 77.1
2224 Female, age 72, unknown 76.9
2273 Male, age 74, both hemispheres 76.2
2316 Male, age 76, right hemisphere 73.3
Red nucleus
nTPM: 78.3
2588 Male, age 74, left hemisphere 83.5
1821 Female, age 72, unknown 81.2
2584 Male, age 75, left hemisphere 80.4
2785 Male, age 18, unknown 80.1
2769 Male, age 72, unknown 78.7
2725 Female, age 75, unknown 77.1
1865 Male, age 51, unknown 77.0
2503 Female, age 72, unknown 76.9
1954 Female, age 42, unknown 76.8
2227 Male, age 72, unknown 76.4
1904 Male, age 53, unknown 76.2
2823 Male, age 76, right hemisphere 75.9
Substantia nigra
nTPM: 83.8
1916 Female, age 42, unknown 93.4
1851 Male, age 51, unknown 88.8
2665 Male, age 74, both hemispheres 86.9
2241 Male, age 72, unknown 84.9
2583 Male, age 75, right hemisphere 83.2
2699 Male, age 18, unknown 83.0
1889 Female, age 72, unknown 82.5
2590 Female, age 75, unknown 80.0
1941 Male, age 53, unknown 79.1
2409 Female, age 72, unknown 75.9
Superior colliculus
nTPM: 78.3
2664 Male, age 75, both hemispheres 83.4
2668 Female, age 75, unknown 82.4
1796 Male, age 53, unknown 79.9
1839 Male, age 51, unknown 79.9
2087 Female, age 72, unknown 78.8
1895 Male, age 76, right hemisphere 77.8
2587 Male, age 74, left hemisphere 76.9
2261 Male, age 18, unknown 75.5
1995 Male, age 72, unknown 75.0
1913 Female, age 42, unknown 73.2
Ventral tegmental area
nTPM: 80.8
2410 Female, age 72, unknown 86.7
1915 Female, age 42, unknown 85.8
2218 Male, age 76, both hemispheres 80.5
1942 Male, age 51, unknown 78.2
2223 Female, age 72, unknown 77.1
2021 Male, age 53, unknown 76.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.0
Samples: 139

Max nTPM: 104.5
Min nTPM: 36.0
Std nTPM: 10.8
Median nTPM: 55.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 104.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 87.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 82.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 81.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 78.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 77.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 76.6
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 74.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 71.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 71.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 17.9
Min nTPM: 12.8
Sample A Female 16.4
Sample B Female 12.8
Sample C Male 17.9
Sample D Male 16.6
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 13.4
Min nTPM: 13.3
Sample B Female 13.3
Sample C Male 13.4
Sample D Male 13.3
Substantia nigra
nTPM: 14.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.7
Sample A Female 14.6
Sample B Female 12.7
Sample C Male 15.0
Sample D Male 15.5
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.8
Sample A Female 15.3
Sample B Female 13.8
Sample C Male 18.6
Sample D Male 16.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.6
Samples: 4

Max nTPM: 62.5
Min nTPM: 58.4
Sample A Male 60.7
Sample B Male 62.5
Sample C Female 58.4
Sample D Female 60.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68193029 Antisense, RP_040825_01_F02, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.