BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.1 nTPM
HPA:35.1 nTPM
GTEx:37.9 nTPM
FANTOM5:80.7 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:19.0 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026306Antibody HPA026309Antibody CAB016538
Glial cells Not detectedHighHigh
Neuronal cells Not detectedMediumMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.6
1857 Female, age 85, left hemisphere 35.0
2481 Female, age 94, left hemisphere 34.9
1854 Male, age 80, left hemisphere 34.3
2846 Female, age 79, unknown 33.7
1781 Male, age 74, unknown 33.5
2288 Male, age 75, left hemisphere 33.3
2290 Female, age 72, unknown 33.1
2289 Male, age 61, right hemisphere 31.2
Claustrum
nTPM: 31.3
2392 Female, age 94, both hemispheres 32.7
1956 Male, age 74, unknown 32.4
2196 Female, age 79, unknown 32.0
2198 Male, age 80, both hemispheres 32.0
2491 Male, age 75, both hemispheres 31.9
2568 Male, age 61, both hemispheres 30.8
2284 Female, age 91, both hemispheres 30.7
2292 Female, age 85, both hemispheres 30.7
2645 Female, age 72, unknown 28.8
Globus pallidus, externus
nTPM: 32.5
2772 Female, age 79, unknown 34.7
1996 Male, age 80, right hemisphere 34.1
2395 Male, age 75, both hemispheres 33.1
2646 Male, age 61, right hemisphere 32.4
2567 Female, age 72, unknown 28.0
Globus pallidus, internus
nTPM: 33.2
2287 Male, age 75, right hemisphere 36.3
2483 Female, age 94, right hemisphere 35.9
2778 Female, age 91, both hemispheres 35.2
2037 Male, age 80, right hemisphere 33.1
1818 Male, age 74, unknown 31.8
2566 Female, age 72, unknown 30.3
2111 Female, age 85, right hemisphere 30.0
Nucleus accumbens
nTPM: 34.7
1856 Female, age 91, right hemisphere 36.7
2698 Female, age 72, unknown 35.1
2824 Male, age 61, right hemisphere 35.1
2286 Male, age 75, left hemisphere 35.0
1783 Male, age 74, unknown 34.9
1806 Female, age 85, left hemisphere 34.6
2391 Female, age 94, left hemisphere 34.5
2732 Male, age 80, right hemisphere 31.9
Nucleus basalis of Meynert
nTPM: 32.3
2393 Male, age 80, right hemisphere 33.1
2821 Male, age 75, both hemispheres 32.8
2569 Male, age 61, both hemispheres 32.0
2484 Female, age 94, left hemisphere 31.4
Nucleus of the diagonal band
nTPM: 35.1
2195 Female, age 85, both hemispheres 36.2
1812 Female, age 91, both hemispheres 36.1
2775 Male, age 80, right hemisphere 35.9
2029 Male, age 61, right hemisphere 34.0
1979 Male, age 74, unknown 33.6
Olfactory tubercle
nTPM: 33.3
1846 Male, age 80, right hemisphere 36.0
1998 Female, age 91, both hemispheres 33.7
2856 Male, age 75, right hemisphere 31.9
2487 Female, age 94, left hemisphere 31.7
Putamen
nTPM: 32.6
1838 Male, age 80, right hemisphere 34.7
2482 Female, age 94, left hemisphere 34.7
1937 Female, age 91, right hemisphere 34.2
2466 Female, age 79, unknown 33.3
1829 Male, age 74, unknown 32.4
2647 Male, age 75, left hemisphere 29.7
2489 Female, age 72, unknown 29.0
Septal nuclei
nTPM: 33.8
2031 Female, age 72, unknown 36.3
1960 Male, age 74, unknown 35.7
2009 Female, age 91, both hemispheres 34.4
2059 Female, age 85, both hemispheres 33.8
2629 Female, age 94, right hemisphere 32.7
2199 Male, age 80, right hemisphere 32.4
2394 Male, age 61, left hemisphere 31.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.1
Samples: 246

Max nTPM: 65.8
Min nTPM: 18.2
Std nTPM: 7.5
Median nTPM: 31.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 65.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 61.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 60.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 57.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 55.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 55.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 54.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 51.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 51.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 49.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.9
Samples: 246

Max nTPM: 63.9
Min nTPM: 22.4
Std nTPM: 8.5
Median nTPM: 36.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 63.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 63.5
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 62.4
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 61.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 60.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 60.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 60.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 59.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 59.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 59.4
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 59.0
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Brain - Putamen (basal ganglia)
Average nTPM: 33.5
Samples: 205

Max nTPM: 64.2
Min nTPM: 17.1
Std nTPM: 7.3
Median nTPM: 32.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 64.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 57.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 55.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 52.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 52.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 51.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 49.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 48.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 48.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 48.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 46.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.7
FF:10164-103B2 76 years, female 80.7
Globus pallidus
Scaled Tags Per Million: 58.5
FF:10161-103A8 76 years, female 61.0
FF:10175-103C4 60 years, female 56.0
Nucleus accumbens
Scaled Tags Per Million: 39.7
FF:10037-101F1 23-56 years, mixed 39.7
Putamen
Scaled Tags Per Million: 65.8
FF:10176-103C5 60 years, female 65.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Caudate
nTPM: 9.3
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 8.7
Sample C Male 10.4
Sample D Male 10.0
Putamen
nTPM: 10.1
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.7
Sample A Female 9.7
Sample B Female 8.7
Sample C Male 11.7
Sample D Male 10.2
Septum
nTPM: 10.2
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 10.7
Sample C Male 11.3
Sample D Male 10.0
Ventral pallidum
nTPM: 9.4
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 9.8
Sample C Male 9.8
Sample D Male 10.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.0
Samples: 4

Max nTPM: 21.6
Min nTPM: 17.8
Sample A Male 18.3
Sample B Male 21.6
Sample C Female 18.1
Sample D Female 17.8
Septum
nTPM: 14.4
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.1
Sample A Male 15.2
Sample B Male 15.4
Sample C Female 12.1
Sample D Female 14.7
Ventral forebrain
nTPM: 16.0
Samples: 4

Max nTPM: 16.3
Min nTPM: 15.3
Sample A Male 16.1
Sample B Male 15.3
Sample C Female 16.3
Sample D Female 16.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70812768 Antisense, RP_050712_02_E10, Mouse strain C57BL/6J (56 days, male) 0.3
68191360 Antisense, RP_041129_01_A07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
70812768 Antisense, RP_050712_02_E10, Mouse strain C57BL/6J (56 days, male) 0.2
68191360 Antisense, RP_041129_01_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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