MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:29.1 nTPM
FANTOM5:46.9 Scaled Tags Per Million
Pig:12.0 nTPM
Mouse:13.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.0
1870 Female, age 42, unknown 33.2
2411 Female, age 72, unknown 32.4
1827 Male, age 72, unknown 31.7
1830 Male, age 51, unknown 31.3
2828 Female, age 72, unknown 31.2
1833 Male, age 53, unknown 30.7
2019 Male, age 18, unknown 30.6
2666 Male, age 74, left hemisphere 29.9
2219 Male, age 76, both hemispheres 29.7
2586 Male, age 75, left hemisphere 29.2
Dorsal raphe nucleus
nTPM: 32.7
2298 Female, age 72, unknown 35.5
2047 Male, age 72, unknown 32.8
1828 Male, age 53, unknown 32.2
2016 Female, age 72, unknown 31.8
2750 Male, age 76, both hemispheres 31.0
Inferior colliculus
nTPM: 31.5
1848 Female, age 42, unknown 32.0
2097 Female, age 72, unknown 32.0
2849 Male, age 72, unknown 31.7
1890 Male, age 53, unknown 30.3
Median raphe nucleus
nTPM: 30.4
2220 Male, age 76, midline 30.4
Pedunculopontine tegmental nucleus
nTPM: 31.7
2338 Male, age 61, both hemispheres 32.2
1921 Female, age 85, both hemispheres 31.8
2334 Male, age 80, both hemispheres 31.2
Periaquaductal grey, anterior
nTPM: 31.6
1795 Male, age 51, unknown 32.0
1947 Male, age 18, unknown 31.8
2502 Female, age 75, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 32.1
1840 Male, age 53, unknown 33.0
2850 Male, age 76, both hemispheres 33.0
2464 Female, age 72, unknown 31.4
1831 Male, age 72, unknown 31.0
Periaquaductal grey, lateral
nTPM: 33.2
2272 Male, age 74, both hemispheres 34.0
2053 Male, age 18, unknown 33.1
2140 Male, age 76, both hemispheres 32.6
Pretectal area
nTPM: 32.2
2273 Male, age 74, both hemispheres 36.2
2667 Female, age 75, unknown 34.0
2224 Female, age 72, unknown 33.7
1944 Female, age 72, unknown 32.2
2825 Male, age 18, unknown 32.2
1817 Female, age 42, unknown 31.5
2316 Male, age 76, right hemisphere 31.5
1815 Male, age 53, unknown 31.2
2007 Male, age 72, unknown 31.2
1816 Male, age 51, unknown 30.9
2407 Male, age 75, both hemispheres 30.0
Red nucleus
nTPM: 30.9
1821 Female, age 72, unknown 32.5
1954 Female, age 42, unknown 31.7
2227 Male, age 72, unknown 31.5
2725 Female, age 75, unknown 31.5
1865 Male, age 51, unknown 31.2
1904 Male, age 53, unknown 31.2
2503 Female, age 72, unknown 31.0
2769 Male, age 72, unknown 30.9
2823 Male, age 76, right hemisphere 30.7
2785 Male, age 18, unknown 30.4
2588 Male, age 74, left hemisphere 29.3
2584 Male, age 75, left hemisphere 28.9
Substantia nigra
nTPM: 31.6
2409 Female, age 72, unknown 32.5
1851 Male, age 51, unknown 32.3
1941 Male, age 53, unknown 32.3
2699 Male, age 18, unknown 31.9
2241 Male, age 72, unknown 31.7
1889 Female, age 72, unknown 31.6
1916 Female, age 42, unknown 31.5
2590 Female, age 75, unknown 31.0
2665 Male, age 74, both hemispheres 31.0
2583 Male, age 75, right hemisphere 30.2
Superior colliculus
nTPM: 31.6
2587 Male, age 74, left hemisphere 33.2
1796 Male, age 53, unknown 32.4
1913 Female, age 42, unknown 32.3
2261 Male, age 18, unknown 31.9
1839 Male, age 51, unknown 31.8
1995 Male, age 72, unknown 31.6
2087 Female, age 72, unknown 31.2
1895 Male, age 76, right hemisphere 30.9
2668 Female, age 75, unknown 30.4
2664 Male, age 75, both hemispheres 30.0
Ventral tegmental area
nTPM: 32.0
2410 Female, age 72, unknown 33.4
1915 Female, age 42, unknown 32.2
2223 Female, age 72, unknown 32.2
2021 Male, age 53, unknown 31.9
1942 Male, age 51, unknown 31.1
2218 Male, age 76, both hemispheres 31.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.1
Samples: 139

Max nTPM: 60.0
Min nTPM: 19.3
Std nTPM: 6.5
Median nTPM: 27.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 50.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 46.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 44.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 40.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 39.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 38.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 37.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.9
FF:10158-103A5 76 years, female 46.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.0
Pig sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 16.2
Min nTPM: 8.4
Sample A Female 16.2
Sample B Female 11.7
Sample C Male 8.4
Sample D Male 11.2
Periaqueductal gray
nTPM: 11.8
Samples: 3

Max nTPM: 12.4
Min nTPM: 11.2
Sample B Female 11.2
Sample C Male 12.4
Sample D Male 11.7
Substantia nigra
nTPM: 12.0
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.3
Sample A Female 13.5
Sample B Female 11.3
Sample C Male 11.6
Sample D Male 11.6
Superior colliculi
nTPM: 11.0
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.3
Sample A Female 12.0
Sample B Female 10.3
Sample C Male 10.3
Sample D Male 11.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.2
Sample A Male 14.1
Sample B Male 13.0
Sample C Female 12.2
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70812768 Antisense, RP_050712_02_E10, Mouse strain C57BL/6J (56 days, male) 0.5
68191360 Antisense, RP_041129_01_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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