MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.3 nTPM
HPA:45.3 nTPM
GTEx:53.2 nTPM
FANTOM5:120.9 Scaled Tags Per Million
Pig:64.5 nTPM
Mouse:104.7 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
2411 Female, age 72, unknown 41.6
2219 Male, age 76, both hemispheres 39.6
1870 Female, age 42, unknown 38.6
1833 Male, age 53, unknown 36.9
1830 Male, age 51, unknown 35.6
1827 Male, age 72, unknown 35.5
2019 Male, age 18, unknown 34.5
2828 Female, age 72, unknown 33.8
2586 Male, age 75, left hemisphere 32.1
2666 Male, age 74, left hemisphere 31.9
Dorsal raphe nucleus
nTPM: 39.9
2750 Male, age 76, both hemispheres 43.5
2298 Female, age 72, unknown 42.8
2047 Male, age 72, unknown 40.5
1828 Male, age 53, unknown 37.4
2016 Female, age 72, unknown 35.5
Inferior colliculus
nTPM: 35.3
2097 Female, age 72, unknown 39.4
1848 Female, age 42, unknown 36.2
1890 Male, age 53, unknown 33.4
2849 Male, age 72, unknown 32.2
Median raphe nucleus
nTPM: 45.3
2220 Male, age 76, midline 45.3
Pedunculopontine tegmental nucleus
nTPM: 40.0
2338 Male, age 61, both hemispheres 41.0
2334 Male, age 80, both hemispheres 40.5
1921 Female, age 85, both hemispheres 38.4
Periaquaductal grey, anterior
nTPM: 37.2
1947 Male, age 18, unknown 38.2
2502 Female, age 75, unknown 37.1
1795 Male, age 51, unknown 36.3
Periaquaductal grey, dorsal
nTPM: 34.7
2464 Female, age 72, unknown 36.1
2850 Male, age 76, both hemispheres 35.7
1840 Male, age 53, unknown 33.9
1831 Male, age 72, unknown 33.3
Periaquaductal grey, lateral
nTPM: 34.5
2272 Male, age 74, both hemispheres 36.8
2053 Male, age 18, unknown 33.8
2140 Male, age 76, both hemispheres 33.1
Pretectal area
nTPM: 36.2
2224 Female, age 72, unknown 39.0
1944 Female, age 72, unknown 38.8
2273 Male, age 74, both hemispheres 38.0
1815 Male, age 53, unknown 37.0
1816 Male, age 51, unknown 36.9
1817 Female, age 42, unknown 36.3
2667 Female, age 75, unknown 35.9
2007 Male, age 72, unknown 34.8
2825 Male, age 18, unknown 34.8
2316 Male, age 76, right hemisphere 34.5
2407 Male, age 75, both hemispheres 32.6
Red nucleus
nTPM: 36.5
1821 Female, age 72, unknown 40.7
1904 Male, age 53, unknown 39.0
1954 Female, age 42, unknown 38.0
1865 Male, age 51, unknown 37.9
2503 Female, age 72, unknown 37.9
2725 Female, age 75, unknown 37.3
2823 Male, age 76, right hemisphere 36.7
2227 Male, age 72, unknown 36.5
2769 Male, age 72, unknown 36.3
2785 Male, age 18, unknown 35.5
2584 Male, age 75, left hemisphere 31.2
2588 Male, age 74, left hemisphere 30.9
Substantia nigra
nTPM: 40.5
2241 Male, age 72, unknown 48.4
1916 Female, age 42, unknown 48.3
1851 Male, age 51, unknown 42.9
1941 Male, age 53, unknown 42.4
2699 Male, age 18, unknown 41.4
2590 Female, age 75, unknown 39.7
1889 Female, age 72, unknown 38.1
2409 Female, age 72, unknown 38.0
2665 Male, age 74, both hemispheres 33.9
2583 Male, age 75, right hemisphere 32.2
Superior colliculus
nTPM: 34.7
1913 Female, age 42, unknown 36.8
2261 Male, age 18, unknown 36.8
2587 Male, age 74, left hemisphere 36.8
1796 Male, age 53, unknown 36.7
2087 Female, age 72, unknown 35.2
2668 Female, age 75, unknown 34.3
1895 Male, age 76, right hemisphere 34.1
1839 Male, age 51, unknown 34.0
1995 Male, age 72, unknown 34.0
2664 Male, age 75, both hemispheres 27.9
Ventral tegmental area
nTPM: 42.0
2218 Male, age 76, both hemispheres 46.5
2410 Female, age 72, unknown 45.7
1915 Female, age 42, unknown 41.9
2223 Female, age 72, unknown 41.7
1942 Male, age 51, unknown 38.6
2021 Male, age 53, unknown 37.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.2
Samples: 139

Max nTPM: 75.5
Min nTPM: 37.2
Std nTPM: 7.9
Median nTPM: 52.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 75.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 73.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 72.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 71.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 70.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 69.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 69.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 68.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 68.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 67.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 67.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.9
FF:10158-103A5 76 years, female 120.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.5
Pig sample Sample description nTPM
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 74.4
Min nTPM: 55.5
Sample A Female 74.4
Sample B Female 60.0
Sample C Male 68.2
Sample D Male 55.5
Periaqueductal gray
nTPM: 50.2
Samples: 3

Max nTPM: 55.0
Min nTPM: 44.2
Sample B Female 51.3
Sample C Male 55.0
Sample D Male 44.2
Substantia nigra
nTPM: 57.0
Samples: 4

Max nTPM: 70.7
Min nTPM: 47.7
Sample A Female 70.7
Sample B Female 47.7
Sample C Male 58.9
Sample D Male 50.7
Superior colliculi
nTPM: 58.3
Samples: 4

Max nTPM: 68.8
Min nTPM: 38.2
Sample A Female 64.4
Sample B Female 38.2
Sample C Male 68.8
Sample D Male 61.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.7
Samples: 4

Max nTPM: 107.0
Min nTPM: 101.0
Sample A Male 104.6
Sample B Male 107.0
Sample C Female 106.3
Sample D Female 101.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
73834102 Antisense, RP_050725_01_B09, Mouse strain C57BL/6J (56 days, male) 9.0
70928169 Antisense, RP_050725_01_B09, Mouse strain C57BL/6J (56 days, male) 8.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.