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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:84.7 nTPM
GTEx:85.4 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:91.6 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 84.7
Sample id Sample description nTPM
Putamen
nTPM: 84.7
2482 Female, age 94, left hemisphere 96.2
1829 Male, age 74, unknown 88.0
1838 Male, age 80, right hemisphere 85.4
1937 Female, age 91, right hemisphere 85.1
2466 Female, age 79, unknown 84.4
2647 Male, age 75, left hemisphere 77.0
2489 Female, age 72, unknown 76.8

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 85.4
Samples: 205

Max nTPM: 139.5
Min nTPM: 55.2
Std nTPM: 13.5
Median nTPM: 84.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 139.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 132.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 131.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 130.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 121.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 118.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 116.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 113.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 111.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 111.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 107.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 106.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 106.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 105.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 105.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 103.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 103.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 102.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 102.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 102.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 101.8
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 101.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 101.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 101.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 100.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 99.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 99.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 98.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 98.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 97.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 97.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 97.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 96.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 96.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 95.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 95.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 95.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 95.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 94.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 94.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 94.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 93.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 93.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 93.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 93.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 93.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 93.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 93.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 92.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 92.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 92.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 92.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 92.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 91.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 91.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 91.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 90.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 90.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 90.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 90.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 90.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 90.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 89.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 89.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 89.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 89.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 88.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 88.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 88.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 88.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 88.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 88.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 87.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 87.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 87.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 87.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 86.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 86.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 86.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 86.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 86.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 86.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 86.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 86.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 86.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 86.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 86.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 86.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 85.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 85.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 85.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 85.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 85.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 85.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 84.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 84.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 84.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 84.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 84.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 84.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 84.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 84.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 84.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 84.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 83.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 83.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 83.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 83.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 83.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 83.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 82.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 82.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 82.7
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 82.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 82.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 82.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 82.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 82.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 82.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 82.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 81.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 81.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 81.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 81.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 81.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 81.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 80.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 80.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 80.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 80.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 80.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 80.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 80.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 80.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 80.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 80.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 80.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 79.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 79.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 79.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 79.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 79.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 79.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 78.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 78.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 78.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 78.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 77.6
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 77.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 77.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 77.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 77.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 77.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 77.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 77.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 77.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 76.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 76.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 76.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 76.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 76.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 75.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 75.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 75.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 75.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 74.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 74.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 74.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 74.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 73.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 73.8
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 73.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 73.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 72.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 72.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 72.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 72.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 70.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 70.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 70.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 70.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 70.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 70.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 70.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 69.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 69.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 69.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 69.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 69.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 68.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 68.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 68.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 67.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 67.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 66.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 64.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 63.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 63.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 62.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 61.6
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 61.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 60.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 58.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 57.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 55.2
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 23.2
FF:10176-103C5 60 years, female 23.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.6
Pig sample Sample description nTPM
Putamen
nTPM: 91.6
Samples: 4

Max nTPM: 109.8
Min nTPM: 72.0
Sample A Female 100.7
Sample B Female 72.0
Sample C Male 109.8
Sample D Male 83.7

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