BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.0 nTPM
HPA:7.0 nTPM
GTEx:9.8 nTPM
FANTOM5:46.9 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:40.7 nTPM
Allen mouse:6.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.5
2288 Male, age 75, left hemisphere 6.3
2846 Female, age 79, unknown 5.6
1857 Female, age 85, left hemisphere 5.1
1781 Male, age 74, unknown 4.6
2290 Female, age 72, unknown 4.4
1854 Male, age 80, left hemisphere 3.8
2289 Male, age 61, right hemisphere 3.7
2481 Female, age 94, left hemisphere 2.3
Claustrum
nTPM: 4.5
2392 Female, age 94, both hemispheres 6.8
2568 Male, age 61, both hemispheres 6.2
2284 Female, age 91, both hemispheres 6.0
2491 Male, age 75, both hemispheres 5.5
2198 Male, age 80, both hemispheres 4.9
1956 Male, age 74, unknown 3.9
2645 Female, age 72, unknown 3.4
2196 Female, age 79, unknown 2.1
2292 Female, age 85, both hemispheres 1.7
Globus pallidus, externus
nTPM: 0.8
2772 Female, age 79, unknown 2.5
2395 Male, age 75, both hemispheres 1.6
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 0.5
1818 Male, age 74, unknown 1.6
2287 Male, age 75, right hemisphere 1.3
2483 Female, age 94, right hemisphere 1.1
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.3
1856 Female, age 91, right hemisphere 8.1
2824 Male, age 61, right hemisphere 6.3
2286 Male, age 75, left hemisphere 4.9
1806 Female, age 85, left hemisphere 4.6
1783 Male, age 74, unknown 4.1
2698 Female, age 72, unknown 3.3
2391 Female, age 94, left hemisphere 1.8
2732 Male, age 80, right hemisphere 1.0
Nucleus basalis of Meynert
nTPM: 3.7
2484 Female, age 94, left hemisphere 6.0
2393 Male, age 80, right hemisphere 4.8
2821 Male, age 75, both hemispheres 4.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 6.3
1812 Female, age 91, both hemispheres 7.7
2029 Male, age 61, right hemisphere 7.4
2775 Male, age 80, right hemisphere 6.3
2195 Female, age 85, both hemispheres 6.1
1979 Male, age 74, unknown 4.2
Olfactory tubercle
nTPM: 7.0
1998 Female, age 91, both hemispheres 8.3
2487 Female, age 94, left hemisphere 7.9
2856 Male, age 75, right hemisphere 6.9
1846 Male, age 80, right hemisphere 5.0
Putamen
nTPM: 4.6
1937 Female, age 91, right hemisphere 6.7
2466 Female, age 79, unknown 6.4
1838 Male, age 80, right hemisphere 6.3
1829 Male, age 74, unknown 5.5
2647 Male, age 75, left hemisphere 3.2
2482 Female, age 94, left hemisphere 2.3
2489 Female, age 72, unknown 1.7
Septal nuclei
nTPM: 5.1
2031 Female, age 72, unknown 7.6
1960 Male, age 74, unknown 6.8
2009 Female, age 91, both hemispheres 5.9
2629 Female, age 94, right hemisphere 5.7
2394 Male, age 61, left hemisphere 3.9
2059 Female, age 85, both hemispheres 3.0
2199 Male, age 80, right hemisphere 2.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.9
Samples: 246

Max nTPM: 38.2
Min nTPM: 1.1
Std nTPM: 5.0
Median nTPM: 8.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 38.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 28.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 19.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 19.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 19.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 19.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 18.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 18.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 18.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 18.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 17.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 20.4
Min nTPM: 1.4
Std nTPM: 4.2
Median nTPM: 10.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 20.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 20.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 19.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 18.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 17.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 17.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 16.8
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 16.8
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 16.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 16.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 16.1
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Brain - Putamen (basal ganglia)
Average nTPM: 8.4
Samples: 205

Max nTPM: 24.1
Min nTPM: 1.2
Std nTPM: 4.7
Median nTPM: 8.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 24.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 23.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 21.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 20.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 19.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 18.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 18.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 18.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 17.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 17.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 17.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.6
FF:10164-103B2 76 years, female 28.6
Globus pallidus
Scaled Tags Per Million: 17.1
FF:10175-103C4 60 years, female 26.0
FF:10161-103A8 76 years, female 8.3
Nucleus accumbens
Scaled Tags Per Million: 46.9
FF:10037-101F1 23-56 years, mixed 46.9
Putamen
Scaled Tags Per Million: 42.1
FF:10176-103C5 60 years, female 42.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 25.7
Pig sample Sample description nTPM
Caudate
nTPM: 22.1
Samples: 4

Max nTPM: 25.1
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 20.8
Sample C Male 25.1
Sample D Male 21.6
Putamen
nTPM: 25.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 22.5
Sample C Male 39.0
Sample D Male 23.3
Septum
nTPM: 21.5
Samples: 4

Max nTPM: 26.9
Min nTPM: 15.9
Sample A Female 23.0
Sample B Female 20.3
Sample C Male 26.9
Sample D Male 15.9
Ventral pallidum
nTPM: 21.3
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.6
Sample A Female 23.4
Sample B Female 20.2
Sample C Male 24.0
Sample D Male 17.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 36.7
Samples: 4

Max nTPM: 38.8
Min nTPM: 34.3
Sample A Male 34.3
Sample B Male 34.9
Sample C Female 38.6
Sample D Female 38.8
Septum
nTPM: 40.7
Samples: 4

Max nTPM: 44.2
Min nTPM: 38.0
Sample A Male 38.7
Sample B Male 44.2
Sample C Female 42.0
Sample D Female 38.0
Ventral forebrain
nTPM: 38.9
Samples: 4

Max nTPM: 41.4
Min nTPM: 35.2
Sample A Male 35.2
Sample B Male 39.7
Sample C Female 41.4
Sample D Female 39.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.9
69059903 Antisense, RP_050317_04_E02, Mouse strain C57BL/6J (56 days, male) 6.9
Pallidum
Expression energy: 6.4
69059903 Antisense, RP_050317_04_E02, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

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