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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:132.9 nTPM
HPA:132.9 nTPM
GTEx:141.9 nTPM
FANTOM5:189.1 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:76.2 nTPM
Allen mouse:4.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 132.9
Sample id Sample description nTPM
Amygdala
nTPM: 132.9
2514 Male, age 75, right hemisphere 138.5
2814 Male, age 76, right hemisphere 133.3
2517 Female, age 94, left hemisphere 131.4
1987 Female, age 91, left hemisphere 131.0
2695 Female, age 67, right hemisphere 130.5
Basal amygdala
nTPM: 130.2
2609 Male, age 75, right hemisphere 135.8
1955 Male, age 76, both hemispheres 135.2
2110 Male, age 80, left hemisphere 131.1
2243 Female, age 91, right hemisphere 129.2
2685 Female, age 94, left hemisphere 127.0
2827 Female, age 67, right hemisphere 122.6
Central amygdala
nTPM: 127.9
1905 Male, age 76, both hemispheres 131.2
2239 Male, age 80, left hemisphere 129.1
2701 Female, age 91, right hemisphere 128.8
2515 Male, age 75, right hemisphere 126.7
2826 Female, age 94, left hemisphere 123.6
Corticomedial amygdala
nTPM: 131.7
2240 Male, age 76, both hemispheres 138.9
2429 Female, age 94, left hemisphere 133.0
2428 Male, age 75, right hemisphere 131.4
2242 Female, age 91, right hemisphere 130.6
2829 Male, age 80, left hemisphere 129.4
2535 Female, age 67, right hemisphere 126.9
Lateral amygdala
nTPM: 127.8
2516 Male, age 75, right hemisphere 133.1
1883 Male, age 76, both hemispheres 132.1
2256 Male, age 80, left hemisphere 129.5
2255 Female, age 91, right hemisphere 126.3
2534 Female, age 94, left hemisphere 124.3
2830 Female, age 67, right hemisphere 121.6
Stria terminalis, bed nucleus
nTPM: 127.9
2486 Female, age 94, both hemispheres 129.0
1974 Female, age 91, both hemispheres 128.4
2201 Male, age 74, unknown 126.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 141.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 141.9
Samples: 152

Max nTPM: 371.1
Min nTPM: 41.5
Std nTPM: 47.3
Median nTPM: 136.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 371.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 341.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 338.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 280.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 253.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 247.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 240.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 237.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 223.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 209.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 207.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 207.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 205.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 204.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 192.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 190.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 188.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 187.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 184.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 174.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 171.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 169.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 168.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 167.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 167.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 167.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 166.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 164.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 162.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 161.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 161.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 161.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 161.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 158.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 157.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 157.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 155.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 155.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 155.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 155.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 153.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 153.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 151.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 151.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 151.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 150.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 149.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 148.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 148.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 146.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 146.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 146.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 145.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 145.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 144.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 144.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 143.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 142.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 141.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 141.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 140.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 140.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 140.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 139.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 139.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 138.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 138.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 138.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 138.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 138.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 138.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 138.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 136.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 135.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 135.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 135.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 134.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 132.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 130.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 130.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 130.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 129.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 129.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 128.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 128.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 127.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 127.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 126.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 125.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 125.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 125.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 124.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 123.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 122.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 121.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 121.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 120.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 119.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 118.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 118.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 118.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 118.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 117.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 117.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 117.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 115.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 115.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 114.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 113.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 111.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 109.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 109.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 107.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 107.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 106.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 105.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 104.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 102.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 101.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 101.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 101.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 100.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 100.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 98.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 98.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 97.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 96.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 95.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 94.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 92.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 91.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 90.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 90.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 88.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 86.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 85.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 84.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 83.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 75.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 50.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 41.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 189.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 189.1
FF:10151-102I7 76 years, female 189.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.9
Pig sample Sample description nTPM
Amygdala
nTPM: 16.0
Samples: 4

Max nTPM: 19.5
Min nTPM: 13.1
Sample A Female 19.5
Sample B Female 17.2
Sample C Male 13.1
Sample D Male 14.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 76.2
Samples: 4

Max nTPM: 85.1
Min nTPM: 66.8
Sample A Male 66.8
Sample B Male 85.1
Sample C Female 74.4
Sample D Female 78.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.1
69059927 Antisense, RP_050317_04_E08, Mouse strain C57BL/6J (56 days, male) 4.1

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