MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:135.2 nTPM
HPA:135.2 nTPM
GTEx:114.3 nTPM
FANTOM5:251.3 Scaled Tags Per Million
Pig:20.1 nTPM
Mouse:54.7 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 135.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.5
1870 Female, age 42, unknown 135.2
2219 Male, age 76, both hemispheres 132.7
1833 Male, age 53, unknown 132.2
1830 Male, age 51, unknown 131.4
2019 Male, age 18, unknown 130.9
2411 Female, age 72, unknown 129.3
2828 Female, age 72, unknown 129.1
1827 Male, age 72, unknown 128.7
2666 Male, age 74, left hemisphere 125.3
2586 Male, age 75, left hemisphere 120.1
Dorsal raphe nucleus
nTPM: 130.0
2016 Female, age 72, unknown 133.6
2298 Female, age 72, unknown 130.6
1828 Male, age 53, unknown 129.9
2750 Male, age 76, both hemispheres 129.6
2047 Male, age 72, unknown 126.4
Inferior colliculus
nTPM: 132.2
2849 Male, age 72, unknown 135.7
1890 Male, age 53, unknown 132.3
1848 Female, age 42, unknown 130.9
2097 Female, age 72, unknown 129.9
Median raphe nucleus
nTPM: 130.2
2220 Male, age 76, midline 130.2
Pedunculopontine tegmental nucleus
nTPM: 133.4
2338 Male, age 61, both hemispheres 138.3
1921 Female, age 85, both hemispheres 131.9
2334 Male, age 80, both hemispheres 130.0
Periaquaductal grey, anterior
nTPM: 127.7
1795 Male, age 51, unknown 129.0
1947 Male, age 18, unknown 128.6
2502 Female, age 75, unknown 125.4
Periaquaductal grey, dorsal
nTPM: 133.6
2850 Male, age 76, both hemispheres 142.9
1831 Male, age 72, unknown 134.2
1840 Male, age 53, unknown 128.8
2464 Female, age 72, unknown 128.7
Periaquaductal grey, lateral
nTPM: 135.2
2272 Male, age 74, both hemispheres 139.5
2140 Male, age 76, both hemispheres 134.3
2053 Male, age 18, unknown 131.9
Pretectal area
nTPM: 132.7
2667 Female, age 75, unknown 142.3
2273 Male, age 74, both hemispheres 140.8
1944 Female, age 72, unknown 133.0
1815 Male, age 53, unknown 132.6
2316 Male, age 76, right hemisphere 132.3
1817 Female, age 42, unknown 131.5
2825 Male, age 18, unknown 131.1
2224 Female, age 72, unknown 130.4
1816 Male, age 51, unknown 129.9
2407 Male, age 75, both hemispheres 129.7
2007 Male, age 72, unknown 126.1
Red nucleus
nTPM: 132.8
2823 Male, age 76, right hemisphere 138.4
2725 Female, age 75, unknown 137.6
1954 Female, age 42, unknown 136.7
1904 Male, age 53, unknown 135.0
1821 Female, age 72, unknown 134.2
2503 Female, age 72, unknown 133.9
1865 Male, age 51, unknown 133.4
2769 Male, age 72, unknown 131.4
2227 Male, age 72, unknown 130.9
2785 Male, age 18, unknown 130.7
2588 Male, age 74, left hemisphere 127.1
2584 Male, age 75, left hemisphere 123.9
Substantia nigra
nTPM: 128.7
2699 Male, age 18, unknown 135.6
2409 Female, age 72, unknown 132.8
2241 Male, age 72, unknown 132.0
1889 Female, age 72, unknown 131.0
1941 Male, age 53, unknown 129.4
2583 Male, age 75, right hemisphere 127.6
1916 Female, age 42, unknown 126.0
1851 Male, age 51, unknown 125.2
2665 Male, age 74, both hemispheres 123.8
2590 Female, age 75, unknown 123.7
Superior colliculus
nTPM: 130.6
1995 Male, age 72, unknown 136.6
1895 Male, age 76, right hemisphere 136.0
1913 Female, age 42, unknown 135.5
2087 Female, age 72, unknown 131.4
2587 Male, age 74, left hemisphere 130.5
1839 Male, age 51, unknown 129.6
1796 Male, age 53, unknown 128.6
2261 Male, age 18, unknown 126.7
2668 Female, age 75, unknown 126.6
2664 Male, age 75, both hemispheres 124.9
Ventral tegmental area
nTPM: 129.8
2218 Male, age 76, both hemispheres 133.7
1942 Male, age 51, unknown 131.9
2223 Female, age 72, unknown 131.6
2021 Male, age 53, unknown 129.1
1915 Female, age 42, unknown 127.4
2410 Female, age 72, unknown 125.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 114.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.3
Samples: 139

Max nTPM: 188.7
Min nTPM: 63.5
Std nTPM: 25.7
Median nTPM: 113.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 188.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 187.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 181.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 176.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 168.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 163.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 161.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 160.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 158.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 154.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 152.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 251.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 251.3
FF:10158-103A5 76 years, female 251.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.1
Pig sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 23.5
Min nTPM: 11.5
Sample A Female 23.5
Sample B Female 15.7
Sample C Male 11.5
Sample D Male 12.7
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 14.9
Min nTPM: 13.1
Sample B Female 13.1
Sample C Male 14.9
Sample D Male 14.8
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.0
Sample A Female 16.7
Sample B Female 18.6
Sample C Male 13.0
Sample D Male 13.0
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 33.8
Min nTPM: 12.6
Sample A Female 20.1
Sample B Female 33.8
Sample C Male 12.6
Sample D Male 13.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.7
Samples: 4

Max nTPM: 57.6
Min nTPM: 53.0
Sample A Male 57.6
Sample B Male 54.3
Sample C Female 53.0
Sample D Female 53.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69059927 Antisense, RP_050317_04_E08, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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