BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:56.0 nTPM
HPA:56.0 nTPM
GTEx:42.7 nTPM
FANTOM5:86.1 Scaled Tags Per Million
Pig:69.7 nTPM
Mouse:59.6 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027158Antibody HPA027209
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.4
2481 Female, age 94, left hemisphere 53.7
2288 Male, age 75, left hemisphere 49.3
2846 Female, age 79, unknown 47.0
1854 Male, age 80, left hemisphere 46.6
1857 Female, age 85, left hemisphere 46.5
2290 Female, age 72, unknown 44.8
1781 Male, age 74, unknown 43.2
2289 Male, age 61, right hemisphere 40.3
Claustrum
nTPM: 45.4
1956 Male, age 74, unknown 50.5
2392 Female, age 94, both hemispheres 48.5
2491 Male, age 75, both hemispheres 48.5
2196 Female, age 79, unknown 46.7
2198 Male, age 80, both hemispheres 44.4
2292 Female, age 85, both hemispheres 43.8
2568 Male, age 61, both hemispheres 42.8
2284 Female, age 91, both hemispheres 42.1
2645 Female, age 72, unknown 41.7
Globus pallidus, externus
nTPM: 53.8
2395 Male, age 75, both hemispheres 57.5
1996 Male, age 80, right hemisphere 54.5
2772 Female, age 79, unknown 52.8
2567 Female, age 72, unknown 52.2
2646 Male, age 61, right hemisphere 52.1
Globus pallidus, internus
nTPM: 56.0
2287 Male, age 75, right hemisphere 64.0
2483 Female, age 94, right hemisphere 62.2
2778 Female, age 91, both hemispheres 55.2
2111 Female, age 85, right hemisphere 54.0
1818 Male, age 74, unknown 53.7
2037 Male, age 80, right hemisphere 53.0
2566 Female, age 72, unknown 49.8
Nucleus accumbens
nTPM: 47.3
2391 Female, age 94, left hemisphere 54.7
2286 Male, age 75, left hemisphere 50.2
2698 Female, age 72, unknown 49.0
1806 Female, age 85, left hemisphere 46.4
2824 Male, age 61, right hemisphere 46.0
1856 Female, age 91, right hemisphere 45.4
1783 Male, age 74, unknown 44.8
2732 Male, age 80, right hemisphere 42.3
Nucleus basalis of Meynert
nTPM: 49.4
2569 Male, age 61, both hemispheres 55.3
2484 Female, age 94, left hemisphere 49.3
2393 Male, age 80, right hemisphere 46.6
2821 Male, age 75, both hemispheres 46.5
Nucleus of the diagonal band
nTPM: 50.2
2029 Male, age 61, right hemisphere 53.6
1812 Female, age 91, both hemispheres 53.1
2775 Male, age 80, right hemisphere 52.5
2195 Female, age 85, both hemispheres 48.2
1979 Male, age 74, unknown 43.4
Olfactory tubercle
nTPM: 48.1
1846 Male, age 80, right hemisphere 50.4
1998 Female, age 91, both hemispheres 48.2
2856 Male, age 75, right hemisphere 47.0
2487 Female, age 94, left hemisphere 46.8
Putamen
nTPM: 46.4
2482 Female, age 94, left hemisphere 50.7
1937 Female, age 91, right hemisphere 48.3
1829 Male, age 74, unknown 46.8
1838 Male, age 80, right hemisphere 46.5
2647 Male, age 75, left hemisphere 46.3
2466 Female, age 79, unknown 43.3
2489 Female, age 72, unknown 42.9
Septal nuclei
nTPM: 47.6
2031 Female, age 72, unknown 53.4
2629 Female, age 94, right hemisphere 50.3
1960 Male, age 74, unknown 48.9
2009 Female, age 91, both hemispheres 46.8
2394 Male, age 61, left hemisphere 46.0
2059 Female, age 85, both hemispheres 44.8
2199 Male, age 80, right hemisphere 43.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.3
Samples: 246

Max nTPM: 56.4
Min nTPM: 26.1
Std nTPM: 4.4
Median nTPM: 40.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 56.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 55.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 53.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 52.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 51.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 51.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 51.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 51.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 51.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 50.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 49.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.8
Samples: 246

Max nTPM: 68.2
Min nTPM: 23.5
Std nTPM: 5.2
Median nTPM: 39.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 68.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 61.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 55.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 54.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 53.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 53.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 51.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 51.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 51.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 51.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 51.4
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Brain - Putamen (basal ganglia)
Average nTPM: 42.7
Samples: 205

Max nTPM: 66.7
Min nTPM: 20.3
Std nTPM: 5.6
Median nTPM: 42.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 66.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 64.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 61.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 60.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 59.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 56.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 53.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 53.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 53.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 52.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 52.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.1
FF:10164-103B2 76 years, female 71.1
Globus pallidus
Scaled Tags Per Million: 86.1
FF:10175-103C4 60 years, female 92.3
FF:10161-103A8 76 years, female 80.0
Nucleus accumbens
Scaled Tags Per Million: 83.3
FF:10037-101F1 23-56 years, mixed 83.3
Putamen
Scaled Tags Per Million: 82.4
FF:10176-103C5 60 years, female 82.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 69.7
Pig sample Sample description nTPM
Caudate
nTPM: 50.5
Samples: 4

Max nTPM: 53.0
Min nTPM: 46.3
Sample A Female 53.0
Sample B Female 52.8
Sample C Male 50.0
Sample D Male 46.3
Putamen
nTPM: 69.7
Samples: 4

Max nTPM: 82.1
Min nTPM: 54.2
Sample A Female 82.1
Sample B Female 54.2
Sample C Male 80.9
Sample D Male 61.5
Septum
nTPM: 69.4
Samples: 4

Max nTPM: 82.8
Min nTPM: 62.9
Sample A Female 68.2
Sample B Female 63.6
Sample C Male 82.8
Sample D Male 62.9
Ventral pallidum
nTPM: 61.0
Samples: 4

Max nTPM: 70.3
Min nTPM: 51.8
Sample A Female 51.8
Sample B Female 66.5
Sample C Male 70.3
Sample D Male 55.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 51.3
Samples: 4

Max nTPM: 54.4
Min nTPM: 48.4
Sample A Male 48.4
Sample B Male 48.4
Sample C Female 54.4
Sample D Female 54.1
Septum
nTPM: 59.6
Samples: 4

Max nTPM: 64.1
Min nTPM: 55.7
Sample A Male 55.7
Sample B Male 64.1
Sample C Female 59.1
Sample D Female 59.6
Ventral forebrain
nTPM: 56.8
Samples: 4

Max nTPM: 59.3
Min nTPM: 54.9
Sample A Male 54.9
Sample B Male 56.9
Sample C Female 56.0
Sample D Female 59.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
69838747 Antisense, RP_050321_03_H07, Mouse strain C57BL/6J (56 days, male) 1.0
69114198 Antisense, RP_050317_01_C06, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 1.3
69114198 Antisense, RP_050317_01_C06, Mouse strain C57BL/6J (56 days, male) 1.6
69838747 Antisense, RP_050321_03_H07, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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