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ITGB1BP1
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                                • ITGB1BP1
                                BRAIN THALAMUS Show tissue menu
                                AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
                                OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                Brain proteome
                                Thalamus
                                THALAMUS - Expression summary
                                Protein profiling
                                Multiplex tissuei

                                A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

                                Protein expressioni

                                On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                Read more
                                No data
                                RNA expressioni

                                A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                Scroll down to view mRNA expression data in more detail.
                                Read more
                                Consensus:54.3 nTPM
                                HPA:54.3 nTPM
                                FANTOM5:57.1 Scaled Tags Per Million
                                Pig:23.0 nTPM
                                Mouse:51.9 nTPM
                                Allen mouse:0.5 Expression energy

                                THALAMUS - Annotated protein expression
                                Pending normal tissue analysis

                                THALAMUS - HPA Brain RNA-seq
                                Max nTPM 54.3
                                Sample id Sample description nTPM
                                Anterior thalamic nucleus, ventral
                                nTPM: 50.3
                                2032 Female, age 42, unknown 58.1
                                2497 Male, age 66, unknown 48.0
                                2396 Male, age 61, right hemisphere 44.8
                                Centromedial thalamic nucleus
                                nTPM: 50.3
                                2401 Male, age 76, right hemisphere 57.7
                                2279 Female, age 85, left hemisphere 42.9
                                Habenula
                                nTPM: 49.5
                                1957 Male, age 80, both hemispheres 56.6
                                2203 Male, age 61, left hemisphere 52.5
                                2252 Male, age 62, unknown 45.6
                                2276 Male, age 66, unknown 43.4
                                Lateral geniculate body
                                nTPM: 52.3
                                2106 Female, age 67, right hemisphere 63.2
                                1953 Male, age 62, unknown 55.6
                                2399 Male, age 61, left hemisphere 55.6
                                2035 Female, age 72, unknown 55.2
                                2575 Female, age 94, right hemisphere 54.3
                                2841 Male, age 80, both hemispheres 46.8
                                2659 Male, age 66, unknown 44.9
                                2857 Male, age 74, right hemisphere 42.8
                                Lateral thalamic nuclei
                                nTPM: 50.9
                                2577 Male, age 74, both hemispheres 62.3
                                1903 Male, age 76, left hemisphere 51.0
                                2573 Female, age 94, left hemisphere 50.0
                                2765 Female, age 67, both hemispheres 46.4
                                2661 Female, age 72, unknown 44.8
                                Medial dorsal thalamic nucleus
                                nTPM: 49.7
                                1859 Male, age 76, both hemispheres 57.7
                                1810 Male, age 48, unknown 56.3
                                2576 Male, age 74, both hemispheres 52.4
                                2283 Male, age 80, right hemisphere 51.9
                                2026 Male, age 62, unknown 51.0
                                2492 Male, age 75, right hemisphere 51.0
                                2498 Male, age 66, unknown 50.8
                                1930 Female, age 42, unknown 49.0
                                1971 Male, age 61, right hemisphere 48.2
                                2402 Female, age 67, both hemispheres 46.4
                                2572 Female, age 94, right hemisphere 46.3
                                2660 Female, age 72, unknown 44.4
                                2039 Female, age 72, unknown 40.6
                                Medial geniculate body
                                nTPM: 46.3
                                1811 Female, age 42, unknown 58.8
                                2571 Male, age 75, right hemisphere 49.0
                                2207 Male, age 80, right hemisphere 46.5
                                2650 Female, age 94, left hemisphere 45.0
                                2657 Male, age 74, right hemisphere 44.9
                                2217 Female, age 72, unknown 41.4
                                2049 Male, age 76, both hemispheres 38.2
                                Nucleus reuniens
                                nTPM: 41.3
                                2212 Female, age 67, left hemisphere 42.8
                                2210 Female, age 85, left hemisphere 42.3
                                2205 Male, age 80, left hemisphere 39.0
                                Nucleus rhomboideus
                                nTPM: 47.7
                                2206 Male, age 80, both hemispheres 58.9
                                2280 Female, age 85, left hemisphere 43.3
                                2213 Female, age 67, left hemisphere 41.0
                                Posterior thalamic nucleus
                                nTPM: 47.2
                                2266 Male, age 76, right hemisphere 50.7
                                2649 Female, age 94, both hemispheres 47.3
                                2655 Male, age 74, right hemisphere 46.9
                                2495 Female, age 67, right hemisphere 43.8
                                Pulvinar
                                nTPM: 50.4
                                2398 Male, age 61, left hemisphere 56.9
                                2582 Female, age 72, unknown 53.8
                                1972 Male, age 62, unknown 51.8
                                2214 Male, age 76, right hemisphere 50.7
                                2496 Female, age 67, right hemisphere 50.4
                                1932 Male, age 80, right hemisphere 50.2
                                1929 Male, age 48, unknown 50.1
                                1899 Female, age 42, unknown 49.7
                                2499 Male, age 66, unknown 47.8
                                2724 Male, age 74, right hemisphere 42.9
                                Subthalamic nucleus
                                nTPM: 42.8
                                2658 Male, age 74, both hemispheres 49.5
                                2275 Male, age 66, unknown 48.1
                                2282 Male, age 61, both hemispheres 47.7
                                2406 Female, age 72, unknown 44.9
                                2124 Male, age 62, unknown 40.1
                                2056 Female, age 72, unknown 39.9
                                2779 Female, age 42, unknown 36.7
                                2216 Male, age 48, unknown 35.4
                                Ventral posterolateral thalamic nucleus
                                nTPM: 54.3
                                2578 Male, age 74, both hemispheres 60.3
                                2740 Male, age 76, right hemisphere 60.2
                                2197 Male, age 80, both hemispheres 55.8
                                2397 Male, age 61, right hemisphere 53.9
                                2581 Female, age 72, unknown 50.6
                                2570 Male, age 75, right hemisphere 44.8
                                Ventral posteromedial thalamic nucleus
                                nTPM: 53.1
                                2653 Male, age 74, both hemispheres 62.9
                                2202 Male, age 61, left hemisphere 60.4
                                2758 Male, age 80, both hemispheres 55.6
                                2281 Male, age 75, right hemisphere 46.6
                                2127 Male, age 76, right hemisphere 40.2
                                Ventral thalamic nuclei
                                nTPM: 49.3
                                1860 Male, age 76, both hemispheres 54.8
                                2652 Male, age 74, left hemisphere 54.4
                                1845 Male, age 48, unknown 53.5
                                2580 Male, age 66, unknown 48.7
                                2858 Female, age 72, unknown 48.2
                                1912 Female, age 42, unknown 47.9
                                2285 Male, age 62, unknown 47.9
                                2204 Male, age 80, both hemispheres 46.5
                                2291 Female, age 72, unknown 41.6
                                Ventromedial nucleus
                                nTPM: 38.6
                                1982 Female, age 72, unknown 40.4
                                1822 Female, age 42, unknown 36.7
                                Zona incerta
                                nTPM: 44.4
                                2215 Male, age 66, unknown 50.9
                                2208 Male, age 80, right hemisphere 46.8
                                2822 Male, age 74, right hemisphere 46.8
                                2663 Female, age 72, unknown 39.9
                                2403 Male, age 62, unknown 37.4

                                THALAMUS - FANTOM5 CAGEi

                                RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                Read more
                                Max Scaled Tags Per Million 57.1
                                FANTOM5 sample id Sample description Scaled Tags Per Million
                                Thalamus
                                Scaled Tags Per Million: 57.1
                                FF:10154-103A1 76 years, female 57.1

                                THALAMUS - Pig RNA-seqi

                                RNA-seq data obtained from pig brain is reported as nTPM .

                                Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                Read more
                                Average nTPM 23.0
                                Pig sample Sample description nTPM
                                21.823.124.419.426.302468101214161820222426
                                21.823.124.419.426.302468101214161820222426
                                Thalamus
                                nTPM: 23.0
                                Samples: 4

                                Max nTPM: 26.3
                                Min nTPM: 19.4
                                Sample A Female 23.7
                                Sample B Female 19.4
                                Sample C Male 26.3
                                Sample D Male 22.6

                                THALAMUS - Mouse RNA-seqi

                                RNA-seq data obtained from mouse brain is reported as nTPM .

                                Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                Read more
                                Average nTPM 51.9
                                Mouse sample Sample description nTPM
                                50.051.253.149.056.30510152025303540455055
                                50.051.253.149.056.30510152025303540455055
                                Thalamus
                                nTPM: 51.9
                                Samples: 4

                                Max nTPM: 56.3
                                Min nTPM: 49.0
                                Sample A Male 50.3
                                Sample B Male 49.0
                                Sample C Female 56.3
                                Sample D Female 52.1

                                THALAMUS - Allen Mouse ISHi

                                In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                Read more
                                Max Expression energy 0.5
                                Allen experiment id Experiment description Expression energy
                                Thalamus
                                Expression energy: 0.5
                                68523324 Antisense, RP_050118_02_E08, Mouse strain C57BL/6J (56 days, male) 0.7
                                71015806 Antisense, RP_050725_02_H04, Mouse strain C57BL/6J (56 days, male) 0.3

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