MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:39.0 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:32.1 nTPM
Mouse:51.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2586 Male, age 75, left hemisphere 30.3
2828 Female, age 72, unknown 29.4
1870 Female, age 42, unknown 29.2
1827 Male, age 72, unknown 27.3
2411 Female, age 72, unknown 27.3
1833 Male, age 53, unknown 27.0
2666 Male, age 74, left hemisphere 25.3
1830 Male, age 51, unknown 25.1
2219 Male, age 76, both hemispheres 23.2
2019 Male, age 18, unknown 23.0
Dorsal raphe nucleus
nTPM: 31.2
2016 Female, age 72, unknown 36.8
1828 Male, age 53, unknown 31.3
2298 Female, age 72, unknown 31.1
2047 Male, age 72, unknown 31.0
2750 Male, age 76, both hemispheres 25.9
Inferior colliculus
nTPM: 30.0
1848 Female, age 42, unknown 32.5
2849 Male, age 72, unknown 29.8
2097 Female, age 72, unknown 29.7
1890 Male, age 53, unknown 28.1
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Pedunculopontine tegmental nucleus
nTPM: 25.9
1921 Female, age 85, both hemispheres 27.5
2334 Male, age 80, both hemispheres 26.4
2338 Male, age 61, both hemispheres 23.7
Periaquaductal grey, anterior
nTPM: 27.7
1795 Male, age 51, unknown 29.3
1947 Male, age 18, unknown 28.0
2502 Female, age 75, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 33.2
1840 Male, age 53, unknown 36.9
2850 Male, age 76, both hemispheres 34.5
2464 Female, age 72, unknown 31.5
1831 Male, age 72, unknown 30.0
Periaquaductal grey, lateral
nTPM: 30.0
2053 Male, age 18, unknown 32.2
2140 Male, age 76, both hemispheres 30.9
2272 Male, age 74, both hemispheres 26.8
Pretectal area
nTPM: 28.5
2224 Female, age 72, unknown 32.2
1816 Male, age 51, unknown 30.4
1944 Female, age 72, unknown 30.0
2825 Male, age 18, unknown 29.4
2667 Female, age 75, unknown 29.2
1817 Female, age 42, unknown 29.1
2273 Male, age 74, both hemispheres 28.7
1815 Male, age 53, unknown 28.6
2316 Male, age 76, right hemisphere 26.8
2407 Male, age 75, both hemispheres 25.4
2007 Male, age 72, unknown 23.6
Red nucleus
nTPM: 27.2
2503 Female, age 72, unknown 30.8
1954 Female, age 42, unknown 30.6
1821 Female, age 72, unknown 29.7
2823 Male, age 76, right hemisphere 28.3
2227 Male, age 72, unknown 28.0
1904 Male, age 53, unknown 27.8
2725 Female, age 75, unknown 27.7
2769 Male, age 72, unknown 27.6
1865 Male, age 51, unknown 26.2
2588 Male, age 74, left hemisphere 24.6
2785 Male, age 18, unknown 22.4
2584 Male, age 75, left hemisphere 22.3
Substantia nigra
nTPM: 29.0
2699 Male, age 18, unknown 37.3
2241 Male, age 72, unknown 30.4
2590 Female, age 75, unknown 29.4
1851 Male, age 51, unknown 29.2
1916 Female, age 42, unknown 29.2
1889 Female, age 72, unknown 29.0
2665 Male, age 74, both hemispheres 27.9
2583 Male, age 75, right hemisphere 27.1
2409 Female, age 72, unknown 26.5
1941 Male, age 53, unknown 24.1
Superior colliculus
nTPM: 28.4
1995 Male, age 72, unknown 32.8
2087 Female, age 72, unknown 29.8
1913 Female, age 42, unknown 29.3
2664 Male, age 75, both hemispheres 29.1
1796 Male, age 53, unknown 28.0
2587 Male, age 74, left hemisphere 28.0
2261 Male, age 18, unknown 27.9
2668 Female, age 75, unknown 27.9
1839 Male, age 51, unknown 27.0
1895 Male, age 76, right hemisphere 24.1
Ventral tegmental area
nTPM: 27.7
2021 Male, age 53, unknown 30.2
1915 Female, age 42, unknown 29.1
2410 Female, age 72, unknown 27.7
1942 Male, age 51, unknown 27.5
2223 Female, age 72, unknown 25.9
2218 Male, age 76, both hemispheres 25.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.0
Samples: 139

Max nTPM: 106.4
Min nTPM: 9.9
Std nTPM: 16.3
Median nTPM: 38.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 106.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 88.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 80.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 79.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 74.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 71.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 71.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 71.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 67.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 67.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 65.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.8
FF:10158-103A5 76 years, female 63.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.1
Pig sample Sample description nTPM
Midbrain
nTPM: 32.1
Samples: 4

Max nTPM: 52.3
Min nTPM: 17.5
Sample A Female 52.3
Sample B Female 35.7
Sample C Male 22.7
Sample D Male 17.5
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 30.0
Min nTPM: 21.7
Sample B Female 30.0
Sample C Male 24.7
Sample D Male 21.7
Substantia nigra
nTPM: 29.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 26.5
Sample A Female 33.4
Sample B Female 28.6
Sample C Male 26.5
Sample D Male 27.8
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 31.2
Min nTPM: 22.9
Sample A Female 31.2
Sample B Female 22.9
Sample C Male 29.1
Sample D Male 23.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.8
Samples: 4

Max nTPM: 52.6
Min nTPM: 51.1
Sample A Male 51.9
Sample B Male 52.6
Sample C Female 51.7
Sample D Female 51.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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