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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.2 nTPM
HPA:46.2 nTPM
GTEx:35.9 nTPM
FANTOM5:32.6 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:46.3 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 46.2
Sample id Sample description nTPM
Amygdala
nTPM: 44.8
2814 Male, age 76, right hemisphere 45.9
2517 Female, age 94, left hemisphere 45.2
1987 Female, age 91, left hemisphere 44.9
2514 Male, age 75, right hemisphere 44.2
2695 Female, age 67, right hemisphere 44.0
Basal amygdala
nTPM: 45.1
1955 Male, age 76, both hemispheres 48.0
2243 Female, age 91, right hemisphere 46.0
2827 Female, age 67, right hemisphere 45.8
2685 Female, age 94, left hemisphere 45.1
2609 Male, age 75, right hemisphere 43.9
2110 Male, age 80, left hemisphere 41.8
Central amygdala
nTPM: 45.8
2701 Female, age 91, right hemisphere 51.2
1905 Male, age 76, both hemispheres 48.2
2239 Male, age 80, left hemisphere 45.7
2515 Male, age 75, right hemisphere 42.0
2826 Female, age 94, left hemisphere 41.7
Corticomedial amygdala
nTPM: 45.3
2242 Female, age 91, right hemisphere 47.8
2240 Male, age 76, both hemispheres 46.2
2429 Female, age 94, left hemisphere 46.1
2535 Female, age 67, right hemisphere 44.6
2829 Male, age 80, left hemisphere 43.9
2428 Male, age 75, right hemisphere 43.0
Lateral amygdala
nTPM: 44.8
2255 Female, age 91, right hemisphere 46.6
2830 Female, age 67, right hemisphere 46.6
1883 Male, age 76, both hemispheres 45.5
2534 Female, age 94, left hemisphere 44.0
2516 Male, age 75, right hemisphere 43.6
2256 Male, age 80, left hemisphere 42.3
Stria terminalis, bed nucleus
nTPM: 46.2
2201 Male, age 74, unknown 49.3
1974 Female, age 91, both hemispheres 44.8
2486 Female, age 94, both hemispheres 44.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 35.9
Samples: 152

Max nTPM: 77.5
Min nTPM: 14.0
Std nTPM: 11.3
Median nTPM: 34.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 77.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 75.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 69.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 60.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 59.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 58.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 53.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 53.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 52.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 50.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 50.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 50.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 50.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 49.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 49.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 49.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 49.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 47.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 46.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 46.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 46.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 46.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 45.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 45.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 45.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 44.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 44.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 44.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 44.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 44.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 44.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 43.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 43.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 43.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 43.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 43.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 42.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 41.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 41.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 41.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 40.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 40.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 40.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 39.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 39.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 38.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 38.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 38.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 38.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 38.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 38.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 38.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 38.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 37.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 37.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 37.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 36.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 36.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 36.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 36.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 35.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 35.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 35.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 35.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 35.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 34.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 34.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 34.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 33.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 33.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 33.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 33.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 33.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 33.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 33.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 33.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 32.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 32.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 32.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 32.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 32.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 32.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 32.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 32.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 31.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 31.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 31.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 31.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 31.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 31.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 30.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 30.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 30.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 30.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 30.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 29.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 29.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 29.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 29.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 29.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 29.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 29.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 28.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 28.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 28.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 28.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 27.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 27.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 27.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 27.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 27.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 25.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 25.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 25.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 24.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 24.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 24.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 24.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 24.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 23.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 23.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 23.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 23.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 23.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 23.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 22.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 22.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 22.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 21.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 21.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 21.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 21.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 21.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 21.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 20.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 18.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 18.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 18.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 15.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 14.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 14.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 32.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 32.6
FF:10151-102I7 76 years, female 32.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 11.6
Pig sample Sample description nTPM
Amygdala
nTPM: 11.7
Samples: 4

Max nTPM: 17.1
Min nTPM: 9.2
Sample A Female 17.1
Sample B Female 11.1
Sample C Male 9.2
Sample D Male 9.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 46.3
Samples: 4

Max nTPM: 53.2
Min nTPM: 36.9
Sample A Male 36.9
Sample B Male 47.3
Sample C Female 53.2
Sample D Female 47.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
74988760 Antisense, RP_060315_05_H04, Mouse strain C57BL/6J (56 days, male) 0.1
70724529 Antisense, RP_050705_02_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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