MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.7 nTPM
HPA:49.7 nTPM
GTEx:33.4 nTPM
FANTOM5:55.4 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:57.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.3
1833 Male, age 53, unknown 48.0
2219 Male, age 76, both hemispheres 48.0
1827 Male, age 72, unknown 47.5
2666 Male, age 74, left hemisphere 47.4
2411 Female, age 72, unknown 47.2
1870 Female, age 42, unknown 47.0
1830 Male, age 51, unknown 46.8
2019 Male, age 18, unknown 46.0
2828 Female, age 72, unknown 43.8
2586 Male, age 75, left hemisphere 41.2
Dorsal raphe nucleus
nTPM: 45.9
2750 Male, age 76, both hemispheres 49.2
1828 Male, age 53, unknown 46.0
2047 Male, age 72, unknown 45.3
2298 Female, age 72, unknown 44.5
2016 Female, age 72, unknown 44.4
Inferior colliculus
nTPM: 46.7
1890 Male, age 53, unknown 47.7
2849 Male, age 72, unknown 47.2
1848 Female, age 42, unknown 46.1
2097 Female, age 72, unknown 46.1
Median raphe nucleus
nTPM: 49.7
2220 Male, age 76, midline 49.7
Pedunculopontine tegmental nucleus
nTPM: 49.1
2338 Male, age 61, both hemispheres 51.3
1921 Female, age 85, both hemispheres 48.3
2334 Male, age 80, both hemispheres 47.6
Periaquaductal grey, anterior
nTPM: 44.9
1795 Male, age 51, unknown 45.8
1947 Male, age 18, unknown 45.3
2502 Female, age 75, unknown 43.6
Periaquaductal grey, dorsal
nTPM: 46.5
1831 Male, age 72, unknown 47.5
2464 Female, age 72, unknown 47.2
2850 Male, age 76, both hemispheres 46.8
1840 Male, age 53, unknown 44.6
Periaquaductal grey, lateral
nTPM: 47.5
2272 Male, age 74, both hemispheres 49.9
2053 Male, age 18, unknown 46.7
2140 Male, age 76, both hemispheres 45.8
Pretectal area
nTPM: 47.8
2273 Male, age 74, both hemispheres 50.9
2667 Female, age 75, unknown 50.4
2825 Male, age 18, unknown 48.4
1815 Male, age 53, unknown 48.3
1816 Male, age 51, unknown 48.2
1944 Female, age 72, unknown 48.2
2224 Female, age 72, unknown 47.1
2407 Male, age 75, both hemispheres 47.1
2007 Male, age 72, unknown 47.0
2316 Male, age 76, right hemisphere 45.5
1817 Female, age 42, unknown 44.9
Red nucleus
nTPM: 48.2
2823 Male, age 76, right hemisphere 52.8
1904 Male, age 53, unknown 49.1
2725 Female, age 75, unknown 49.0
2503 Female, age 72, unknown 48.9
2227 Male, age 72, unknown 48.6
1865 Male, age 51, unknown 48.1
2588 Male, age 74, left hemisphere 47.9
1821 Female, age 72, unknown 47.1
1954 Female, age 42, unknown 47.1
2769 Male, age 72, unknown 47.1
2584 Male, age 75, left hemisphere 46.3
2785 Male, age 18, unknown 46.0
Substantia nigra
nTPM: 46.2
1941 Male, age 53, unknown 48.0
2409 Female, age 72, unknown 47.0
2699 Male, age 18, unknown 47.0
1889 Female, age 72, unknown 46.9
2583 Male, age 75, right hemisphere 46.9
1916 Female, age 42, unknown 46.2
2241 Male, age 72, unknown 46.2
2590 Female, age 75, unknown 45.9
1851 Male, age 51, unknown 44.1
2665 Male, age 74, both hemispheres 43.5
Superior colliculus
nTPM: 46.1
1895 Male, age 76, right hemisphere 50.9
1913 Female, age 42, unknown 49.1
2587 Male, age 74, left hemisphere 47.4
2087 Female, age 72, unknown 46.7
2261 Male, age 18, unknown 46.7
1839 Male, age 51, unknown 45.0
1995 Male, age 72, unknown 44.8
2668 Female, age 75, unknown 44.6
1796 Male, age 53, unknown 44.5
2664 Male, age 75, both hemispheres 41.1
Ventral tegmental area
nTPM: 45.7
2218 Male, age 76, both hemispheres 47.2
2223 Female, age 72, unknown 47.2
1942 Male, age 51, unknown 46.6
1915 Female, age 42, unknown 45.3
2410 Female, age 72, unknown 44.6
2021 Male, age 53, unknown 43.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 139

Max nTPM: 73.3
Min nTPM: 11.1
Std nTPM: 12.2
Median nTPM: 32.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 73.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 69.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 66.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 65.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 58.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 51.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 50.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 50.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.4
FF:10158-103A5 76 years, female 55.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 14.2
Sample A Female 16.7
Sample B Female 14.2
Sample C Male 14.2
Sample D Male 23.4
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 16.7
Min nTPM: 13.2
Sample B Female 13.2
Sample C Male 14.7
Sample D Male 16.7
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 21.1
Min nTPM: 11.2
Sample A Female 21.1
Sample B Female 11.2
Sample C Male 15.4
Sample D Male 12.8
Superior colliculi
nTPM: 17.9
Samples: 4

Max nTPM: 20.2
Min nTPM: 15.0
Sample A Female 20.2
Sample B Female 15.0
Sample C Male 16.3
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.9
Samples: 4

Max nTPM: 69.1
Min nTPM: 50.4
Sample A Male 69.1
Sample B Male 50.4
Sample C Female 50.4
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74988760 Antisense, RP_060315_05_H04, Mouse strain C57BL/6J (56 days, male) 0.1
70724529 Antisense, RP_050705_02_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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