MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:145.6 nTPM
HPA:145.6 nTPM
GTEx:168.9 nTPM
FANTOM5:201.3 Scaled Tags Per Million
Pig:77.0 nTPM
Mouse:57.3 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 145.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 128.8
1870 Female, age 42, unknown 144.0
2828 Female, age 72, unknown 138.9
1830 Male, age 51, unknown 137.0
1833 Male, age 53, unknown 135.4
2411 Female, age 72, unknown 131.9
2019 Male, age 18, unknown 131.2
2666 Male, age 74, left hemisphere 124.3
1827 Male, age 72, unknown 124.1
2219 Male, age 76, both hemispheres 110.9
2586 Male, age 75, left hemisphere 110.2
Dorsal raphe nucleus
nTPM: 137.6
2298 Female, age 72, unknown 145.8
2016 Female, age 72, unknown 141.7
2750 Male, age 76, both hemispheres 134.8
2047 Male, age 72, unknown 133.2
1828 Male, age 53, unknown 132.4
Inferior colliculus
nTPM: 123.0
2097 Female, age 72, unknown 124.7
1848 Female, age 42, unknown 124.0
1890 Male, age 53, unknown 121.7
2849 Male, age 72, unknown 121.5
Median raphe nucleus
nTPM: 125.9
2220 Male, age 76, midline 125.9
Pedunculopontine tegmental nucleus
nTPM: 145.6
2338 Male, age 61, both hemispheres 181.0
2334 Male, age 80, both hemispheres 136.2
1921 Female, age 85, both hemispheres 119.6
Periaquaductal grey, anterior
nTPM: 121.7
2502 Female, age 75, unknown 123.9
1947 Male, age 18, unknown 120.9
1795 Male, age 51, unknown 120.4
Periaquaductal grey, dorsal
nTPM: 131.2
2850 Male, age 76, both hemispheres 145.5
1831 Male, age 72, unknown 130.0
2464 Female, age 72, unknown 125.0
1840 Male, age 53, unknown 124.2
Periaquaductal grey, lateral
nTPM: 139.2
2272 Male, age 74, both hemispheres 142.1
2053 Male, age 18, unknown 139.5
2140 Male, age 76, both hemispheres 136.0
Pretectal area
nTPM: 127.5
2273 Male, age 74, both hemispheres 138.1
2224 Female, age 72, unknown 134.5
2316 Male, age 76, right hemisphere 133.8
2407 Male, age 75, both hemispheres 129.0
2825 Male, age 18, unknown 128.7
1817 Female, age 42, unknown 127.2
1815 Male, age 53, unknown 126.6
2667 Female, age 75, unknown 123.8
2007 Male, age 72, unknown 123.1
1944 Female, age 72, unknown 122.1
1816 Male, age 51, unknown 115.7
Red nucleus
nTPM: 137.5
1865 Male, age 51, unknown 150.7
1821 Female, age 72, unknown 150.0
1904 Male, age 53, unknown 146.1
2823 Male, age 76, right hemisphere 145.1
2769 Male, age 72, unknown 140.8
1954 Female, age 42, unknown 140.4
2503 Female, age 72, unknown 138.7
2227 Male, age 72, unknown 138.1
2725 Female, age 75, unknown 137.6
2785 Male, age 18, unknown 133.3
2584 Male, age 75, left hemisphere 117.5
2588 Male, age 74, left hemisphere 112.1
Substantia nigra
nTPM: 131.4
2590 Female, age 75, unknown 145.8
2699 Male, age 18, unknown 140.5
1851 Male, age 51, unknown 133.8
2583 Male, age 75, right hemisphere 131.8
1941 Male, age 53, unknown 129.6
1916 Female, age 42, unknown 128.0
1889 Female, age 72, unknown 127.5
2409 Female, age 72, unknown 126.0
2665 Male, age 74, both hemispheres 125.7
2241 Male, age 72, unknown 124.9
Superior colliculus
nTPM: 128.3
2587 Male, age 74, left hemisphere 146.1
1995 Male, age 72, unknown 143.5
1913 Female, age 42, unknown 141.8
1839 Male, age 51, unknown 127.4
1895 Male, age 76, right hemisphere 125.0
1796 Male, age 53, unknown 122.9
2664 Male, age 75, both hemispheres 121.7
2087 Female, age 72, unknown 120.1
2261 Male, age 18, unknown 118.2
2668 Female, age 75, unknown 116.5
Ventral tegmental area
nTPM: 137.0
2410 Female, age 72, unknown 143.6
2223 Female, age 72, unknown 142.3
2021 Male, age 53, unknown 140.9
1915 Female, age 42, unknown 136.1
2218 Male, age 76, both hemispheres 130.8
1942 Male, age 51, unknown 128.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 168.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 168.9
Samples: 139

Max nTPM: 373.6
Min nTPM: 64.2
Std nTPM: 56.1
Median nTPM: 154.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 373.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 342.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 311.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 309.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 290.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 288.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 285.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 280.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 275.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 259.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 259.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 201.3
FF:10158-103A5 76 years, female 201.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.0
Pig sample Sample description nTPM
Midbrain
nTPM: 68.9
Samples: 4

Max nTPM: 138.7
Min nTPM: 33.3
Sample A Female 138.7
Sample B Female 64.5
Sample C Male 39.1
Sample D Male 33.3
Periaqueductal gray
nTPM: 54.9
Samples: 3

Max nTPM: 62.7
Min nTPM: 44.4
Sample B Female 57.5
Sample C Male 62.7
Sample D Male 44.4
Substantia nigra
nTPM: 77.0
Samples: 4

Max nTPM: 107.4
Min nTPM: 59.0
Sample A Female 107.4
Sample B Female 70.0
Sample C Male 71.5
Sample D Male 59.0
Superior colliculi
nTPM: 59.5
Samples: 4

Max nTPM: 85.6
Min nTPM: 48.0
Sample A Female 85.6
Sample B Female 54.4
Sample C Male 50.0
Sample D Male 48.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 59.9
Min nTPM: 55.0
Sample A Male 59.9
Sample B Male 55.0
Sample C Female 56.5
Sample D Female 57.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
75774115 Antisense, RP_060530_01_B11, Mouse strain C57BL/6J (56 days, male) 4.6
293915 Antisense, RP_040617_01_G02, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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