BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:98.0 nTPM
HPA:98.0 nTPM
GTEx:67.8 nTPM
FANTOM5:148.9 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:78.6 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035319
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 98.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 85.3
2481 Female, age 94, left hemisphere 90.6
2288 Male, age 75, left hemisphere 90.5
2289 Male, age 61, right hemisphere 84.9
2290 Female, age 72, unknown 84.4
2846 Female, age 79, unknown 84.2
1854 Male, age 80, left hemisphere 83.0
1857 Female, age 85, left hemisphere 82.8
1781 Male, age 74, unknown 82.4
Claustrum
nTPM: 83.8
1956 Male, age 74, unknown 91.4
2292 Female, age 85, both hemispheres 90.3
2196 Female, age 79, unknown 90.1
2568 Male, age 61, both hemispheres 82.5
2491 Male, age 75, both hemispheres 82.2
2198 Male, age 80, both hemispheres 81.7
2284 Female, age 91, both hemispheres 79.2
2392 Female, age 94, both hemispheres 79.1
2645 Female, age 72, unknown 77.5
Globus pallidus, externus
nTPM: 98.0
2646 Male, age 61, right hemisphere 112.7
1996 Male, age 80, right hemisphere 106.7
2772 Female, age 79, unknown 98.3
2567 Female, age 72, unknown 90.6
2395 Male, age 75, both hemispheres 81.8
Globus pallidus, internus
nTPM: 97.9
2778 Female, age 91, both hemispheres 101.7
2037 Male, age 80, right hemisphere 98.5
2287 Male, age 75, right hemisphere 98.3
2111 Female, age 85, right hemisphere 97.6
2483 Female, age 94, right hemisphere 97.1
2566 Female, age 72, unknown 96.9
1818 Male, age 74, unknown 95.3
Nucleus accumbens
nTPM: 83.2
2698 Female, age 72, unknown 93.1
2391 Female, age 94, left hemisphere 89.9
2286 Male, age 75, left hemisphere 86.6
2732 Male, age 80, right hemisphere 83.9
1806 Female, age 85, left hemisphere 81.6
1783 Male, age 74, unknown 78.2
2824 Male, age 61, right hemisphere 76.9
1856 Female, age 91, right hemisphere 75.4
Nucleus basalis of Meynert
nTPM: 90.2
2569 Male, age 61, both hemispheres 116.7
2484 Female, age 94, left hemisphere 81.7
2393 Male, age 80, right hemisphere 81.3
2821 Male, age 75, both hemispheres 81.0
Nucleus of the diagonal band
nTPM: 75.2
1979 Male, age 74, unknown 79.6
1812 Female, age 91, both hemispheres 77.7
2195 Female, age 85, both hemispheres 74.5
2029 Male, age 61, right hemisphere 73.2
2775 Male, age 80, right hemisphere 70.9
Olfactory tubercle
nTPM: 76.6
1846 Male, age 80, right hemisphere 80.1
2856 Male, age 75, right hemisphere 79.1
2487 Female, age 94, left hemisphere 75.7
1998 Female, age 91, both hemispheres 71.3
Putamen
nTPM: 82.3
2482 Female, age 94, left hemisphere 88.8
1829 Male, age 74, unknown 86.4
2647 Male, age 75, left hemisphere 84.2
2489 Female, age 72, unknown 83.9
1937 Female, age 91, right hemisphere 78.2
2466 Female, age 79, unknown 77.8
1838 Male, age 80, right hemisphere 77.0
Septal nuclei
nTPM: 78.8
2629 Female, age 94, right hemisphere 83.9
2059 Female, age 85, both hemispheres 82.8
2394 Male, age 61, left hemisphere 82.5
2199 Male, age 80, right hemisphere 82.4
2031 Female, age 72, unknown 74.1
2009 Female, age 91, both hemispheres 73.8
1960 Male, age 74, unknown 71.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 67.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.9
Samples: 246

Max nTPM: 126.4
Min nTPM: 33.3
Std nTPM: 14.4
Median nTPM: 61.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 126.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 107.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 106.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 105.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 102.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 102.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 99.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 99.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 99.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 92.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 89.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.4
Samples: 246

Max nTPM: 121.4
Min nTPM: 27.6
Std nTPM: 14.0
Median nTPM: 53.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 121.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 106.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 96.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 96.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 95.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 89.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 88.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 86.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 85.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 84.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 82.8
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Brain - Putamen (basal ganglia)
Average nTPM: 67.8
Samples: 205

Max nTPM: 128.5
Min nTPM: 36.7
Std nTPM: 16.6
Median nTPM: 65.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 128.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 123.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 118.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 117.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 110.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 105.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 104.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 104.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 103.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 102.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 100.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 143.0
FF:10164-103B2 76 years, female 143.0
Globus pallidus
Scaled Tags Per Million: 148.9
FF:10161-103A8 76 years, female 162.9
FF:10175-103C4 60 years, female 134.9
Nucleus accumbens
Scaled Tags Per Million: 108.9
FF:10037-101F1 23-56 years, mixed 108.9
Putamen
Scaled Tags Per Million: 105.9
FF:10176-103C5 60 years, female 105.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Caudate
nTPM: 25.8
Samples: 4

Max nTPM: 28.7
Min nTPM: 22.3
Sample A Female 28.7
Sample B Female 22.3
Sample C Male 27.7
Sample D Male 24.6
Putamen
nTPM: 31.1
Samples: 4

Max nTPM: 40.2
Min nTPM: 23.1
Sample A Female 40.2
Sample B Female 23.1
Sample C Male 32.2
Sample D Male 29.0
Septum
nTPM: 31.9
Samples: 4

Max nTPM: 38.0
Min nTPM: 27.1
Sample A Female 30.6
Sample B Female 27.1
Sample C Male 38.0
Sample D Male 31.7
Ventral pallidum
nTPM: 29.0
Samples: 4

Max nTPM: 34.4
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 28.6
Sample C Male 34.4
Sample D Male 29.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 78.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 78.6
Samples: 4

Max nTPM: 82.8
Min nTPM: 71.8
Sample A Male 82.8
Sample B Male 71.8
Sample C Female 80.0
Sample D Female 79.9
Septum
nTPM: 51.0
Samples: 4

Max nTPM: 52.5
Min nTPM: 48.0
Sample A Male 52.5
Sample B Male 48.0
Sample C Female 51.6
Sample D Female 51.7
Ventral forebrain
nTPM: 62.5
Samples: 4

Max nTPM: 64.9
Min nTPM: 60.8
Sample A Male 61.7
Sample B Male 60.8
Sample C Female 64.9
Sample D Female 62.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
69837932 Antisense, RP_050224_01_B11, Mouse strain C57BL/6J (56 days, male) 1.8
74819343 Antisense, RP_060315_02_E10, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 1.0
69837932 Antisense, RP_050224_01_B11, Mouse strain C57BL/6J (56 days, male) 1.5
74819343 Antisense, RP_060315_02_E10, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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