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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:107.9 nTPM
HPA:107.9 nTPM
GTEx:118.4 nTPM
FANTOM5:174.7 Scaled Tags Per Million
Pig:147.5 nTPM
Mouse:178.8 nTPM
Allen mouse:16.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 107.9
Sample id Sample description nTPM
Amygdala
nTPM: 107.9
2814 Male, age 76, right hemisphere 118.3
2514 Male, age 75, right hemisphere 118.0
2695 Female, age 67, right hemisphere 104.0
1987 Female, age 91, left hemisphere 102.8
2517 Female, age 94, left hemisphere 96.4
Basal amygdala
nTPM: 93.6
2609 Male, age 75, right hemisphere 101.5
1955 Male, age 76, both hemispheres 100.8
2110 Male, age 80, left hemisphere 94.7
2243 Female, age 91, right hemisphere 92.2
2685 Female, age 94, left hemisphere 90.7
2827 Female, age 67, right hemisphere 81.8
Central amygdala
nTPM: 96.5
1905 Male, age 76, both hemispheres 110.8
2515 Male, age 75, right hemisphere 96.2
2239 Male, age 80, left hemisphere 94.0
2701 Female, age 91, right hemisphere 94.0
2826 Female, age 94, left hemisphere 87.3
Corticomedial amygdala
nTPM: 95.9
2428 Male, age 75, right hemisphere 103.7
2429 Female, age 94, left hemisphere 102.7
2240 Male, age 76, both hemispheres 102.5
2829 Male, age 80, left hemisphere 94.9
2242 Female, age 91, right hemisphere 92.0
2535 Female, age 67, right hemisphere 79.5
Lateral amygdala
nTPM: 92.7
1883 Male, age 76, both hemispheres 108.1
2516 Male, age 75, right hemisphere 103.7
2534 Female, age 94, left hemisphere 89.5
2255 Female, age 91, right hemisphere 87.3
2256 Male, age 80, left hemisphere 86.7
2830 Female, age 67, right hemisphere 81.0
Stria terminalis, bed nucleus
nTPM: 102.9
1974 Female, age 91, both hemispheres 108.2
2486 Female, age 94, both hemispheres 103.1
2201 Male, age 74, unknown 97.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 118.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 118.4
Samples: 152

Max nTPM: 260.6
Min nTPM: 66.1
Std nTPM: 32.9
Median nTPM: 114.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 260.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 222.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 219.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 213.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 213.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 198.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 182.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 175.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 174.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 174.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 171.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 171.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 170.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 166.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 164.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 163.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 156.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 155.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 152.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 149.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 148.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 148.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 147.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 147.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 146.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 141.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 138.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 137.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 135.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 135.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 135.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 134.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 133.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 133.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 133.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 132.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 132.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 131.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 131.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 131.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 130.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 128.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 128.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 128.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 127.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 127.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 127.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 125.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 125.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 125.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 124.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 124.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 123.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 122.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 121.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 121.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 120.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 120.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 118.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 117.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 116.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 116.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 116.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 115.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 115.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 115.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 114.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 114.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 114.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 114.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 113.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 112.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 112.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 111.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 111.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 110.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 109.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 109.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 108.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 107.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 106.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 105.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 103.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 102.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 102.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 101.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 101.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 100.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 100.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 99.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 99.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 99.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 98.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 98.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 98.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 97.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 97.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 96.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 96.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 96.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 96.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 95.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 94.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 94.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 94.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 93.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 93.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 93.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 90.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 90.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 90.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 90.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 88.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 88.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 88.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 88.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 85.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 84.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 83.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 83.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 83.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 82.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 81.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 80.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 79.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 78.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 77.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 77.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 72.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 70.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 67.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 66.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 174.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 174.7
FF:10151-102I7 76 years, female 174.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.5
Pig sample Sample description nTPM
Amygdala
nTPM: 147.5
Samples: 4

Max nTPM: 186.8
Min nTPM: 119.8
Sample A Female 186.8
Sample B Female 157.5
Sample C Male 125.7
Sample D Male 119.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 178.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 178.8
Samples: 4

Max nTPM: 181.9
Min nTPM: 173.7
Sample A Male 178.0
Sample B Male 181.9
Sample C Female 173.7
Sample D Female 181.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.9
323175 Antisense, RP_040617_02_A11, Mouse strain C57BL/6J (56 days, male) 18.1
357095 Antisense, RP_040617_02_A11, Mouse strain C57BL/6J (56 days, male) 16.8
77620339 Antisense, RP_070205_01_B12, Mouse strain C57BL/6J (56 days, male) 15.7
77869857 Antisense, RP_070205_01_B12, Mouse strain C57BL/6J (56 days, male) 10.2

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