MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:114.0 nTPM
HPA:114.0 nTPM
GTEx:141.2 nTPM
FANTOM5:226.6 Scaled Tags Per Million
Pig:235.1 nTPM
Mouse:349.6 nTPM
Allen mouse:16.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.0
2411 Female, age 72, unknown 113.7
1870 Female, age 42, unknown 109.8
1827 Male, age 72, unknown 105.9
2219 Male, age 76, both hemispheres 104.3
1833 Male, age 53, unknown 102.9
2019 Male, age 18, unknown 100.9
1830 Male, age 51, unknown 99.7
2828 Female, age 72, unknown 97.2
2666 Male, age 74, left hemisphere 89.9
2586 Male, age 75, left hemisphere 85.7
Dorsal raphe nucleus
nTPM: 107.9
2298 Female, age 72, unknown 119.1
2750 Male, age 76, both hemispheres 111.3
1828 Male, age 53, unknown 103.8
2016 Female, age 72, unknown 103.4
2047 Male, age 72, unknown 101.9
Inferior colliculus
nTPM: 104.9
2097 Female, age 72, unknown 112.4
1890 Male, age 53, unknown 104.1
1848 Female, age 42, unknown 103.8
2849 Male, age 72, unknown 99.3
Median raphe nucleus
nTPM: 114.0
2220 Male, age 76, midline 114.0
Pedunculopontine tegmental nucleus
nTPM: 113.9
1921 Female, age 85, both hemispheres 116.4
2334 Male, age 80, both hemispheres 114.6
2338 Male, age 61, both hemispheres 110.8
Periaquaductal grey, anterior
nTPM: 104.5
1947 Male, age 18, unknown 110.6
2502 Female, age 75, unknown 102.8
1795 Male, age 51, unknown 100.1
Periaquaductal grey, dorsal
nTPM: 103.7
2850 Male, age 76, both hemispheres 111.9
1840 Male, age 53, unknown 101.7
1831 Male, age 72, unknown 101.5
2464 Female, age 72, unknown 99.8
Periaquaductal grey, lateral
nTPM: 106.1
2272 Male, age 74, both hemispheres 111.8
2053 Male, age 18, unknown 103.4
2140 Male, age 76, both hemispheres 103.1
Pretectal area
nTPM: 107.0
2667 Female, age 75, unknown 114.9
2273 Male, age 74, both hemispheres 113.7
1816 Male, age 51, unknown 111.2
2224 Female, age 72, unknown 110.4
1944 Female, age 72, unknown 109.9
1817 Female, age 42, unknown 108.5
2007 Male, age 72, unknown 106.8
1815 Male, age 53, unknown 106.5
2825 Male, age 18, unknown 102.8
2316 Male, age 76, right hemisphere 101.8
2407 Male, age 75, both hemispheres 91.0
Red nucleus
nTPM: 103.2
1821 Female, age 72, unknown 123.4
1954 Female, age 42, unknown 107.4
2725 Female, age 75, unknown 105.9
1904 Male, age 53, unknown 105.6
2823 Male, age 76, right hemisphere 104.3
1865 Male, age 51, unknown 103.7
2769 Male, age 72, unknown 103.0
2503 Female, age 72, unknown 102.9
2227 Male, age 72, unknown 101.9
2785 Male, age 18, unknown 99.5
2588 Male, age 74, left hemisphere 91.6
2584 Male, age 75, left hemisphere 89.3
Substantia nigra
nTPM: 109.2
2241 Male, age 72, unknown 121.2
1916 Female, age 42, unknown 117.8
1889 Female, age 72, unknown 115.6
1941 Male, age 53, unknown 114.9
2409 Female, age 72, unknown 114.5
1851 Male, age 51, unknown 112.7
2699 Male, age 18, unknown 106.4
2590 Female, age 75, unknown 100.8
2665 Male, age 74, both hemispheres 97.4
2583 Male, age 75, right hemisphere 90.7
Superior colliculus
nTPM: 102.6
2587 Male, age 74, left hemisphere 110.2
1895 Male, age 76, right hemisphere 108.9
2261 Male, age 18, unknown 106.4
1913 Female, age 42, unknown 105.4
2087 Female, age 72, unknown 103.7
1796 Male, age 53, unknown 103.4
1839 Male, age 51, unknown 100.8
2668 Female, age 75, unknown 100.3
1995 Male, age 72, unknown 98.8
2664 Male, age 75, both hemispheres 87.8
Ventral tegmental area
nTPM: 107.2
2410 Female, age 72, unknown 114.3
2218 Male, age 76, both hemispheres 113.9
1915 Female, age 42, unknown 109.7
1942 Male, age 51, unknown 103.5
2223 Female, age 72, unknown 102.2
2021 Male, age 53, unknown 99.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 141.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.2
Samples: 139

Max nTPM: 270.8
Min nTPM: 84.7
Std nTPM: 33.6
Median nTPM: 137.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 270.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 257.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 243.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 227.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 219.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 208.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 204.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 201.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 197.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 195.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 193.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 226.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 226.6
FF:10158-103A5 76 years, female 226.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 235.1
Pig sample Sample description nTPM
Midbrain
nTPM: 235.0
Samples: 4

Max nTPM: 261.2
Min nTPM: 208.3
Sample A Female 261.2
Sample B Female 233.1
Sample C Male 237.5
Sample D Male 208.3
Periaqueductal gray
nTPM: 222.3
Samples: 3

Max nTPM: 244.0
Min nTPM: 207.0
Sample B Female 207.0
Sample C Male 244.0
Sample D Male 215.8
Substantia nigra
nTPM: 217.9
Samples: 4

Max nTPM: 279.5
Min nTPM: 164.2
Sample A Female 279.5
Sample B Female 189.7
Sample C Male 238.1
Sample D Male 164.2
Superior colliculi
nTPM: 235.1
Samples: 4

Max nTPM: 252.7
Min nTPM: 198.9
Sample A Female 252.7
Sample B Female 198.9
Sample C Male 250.6
Sample D Male 238.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 349.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 349.7
Samples: 4

Max nTPM: 358.1
Min nTPM: 337.4
Sample A Male 346.8
Sample B Male 337.4
Sample C Female 358.1
Sample D Female 356.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.0
357095 Antisense, RP_040617_02_A11, Mouse strain C57BL/6J (56 days, male) 16.5
77620339 Antisense, RP_070205_01_B12, Mouse strain C57BL/6J (56 days, male) 15.5
323175 Antisense, RP_040617_02_A11, Mouse strain C57BL/6J (56 days, male) 14.6
77869857 Antisense, RP_070205_01_B12, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.