BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:75.0 nTPM
HPA:75.0 nTPM
GTEx:50.0 nTPM
FANTOM5:0.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA026750
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 75.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 67.4
2289 Male, age 61, right hemisphere 76.9
1854 Male, age 80, left hemisphere 71.6
2290 Female, age 72, unknown 68.3
1781 Male, age 74, unknown 68.0
2288 Male, age 75, left hemisphere 65.5
1857 Female, age 85, left hemisphere 64.2
2846 Female, age 79, unknown 64.1
2481 Female, age 94, left hemisphere 60.3
Claustrum
nTPM: 75.0
2645 Female, age 72, unknown 86.4
2568 Male, age 61, both hemispheres 80.7
2284 Female, age 91, both hemispheres 77.1
2292 Female, age 85, both hemispheres 74.9
2491 Male, age 75, both hemispheres 74.0
2196 Female, age 79, unknown 73.4
2392 Female, age 94, both hemispheres 70.2
2198 Male, age 80, both hemispheres 70.1
1956 Male, age 74, unknown 68.1
Globus pallidus, externus
nTPM: 69.6
2646 Male, age 61, right hemisphere 80.6
2567 Female, age 72, unknown 78.0
2395 Male, age 75, both hemispheres 65.1
1996 Male, age 80, right hemisphere 62.2
2772 Female, age 79, unknown 61.9
Globus pallidus, internus
nTPM: 68.3
2566 Female, age 72, unknown 75.7
2111 Female, age 85, right hemisphere 72.1
2037 Male, age 80, right hemisphere 69.1
2778 Female, age 91, both hemispheres 68.8
1818 Male, age 74, unknown 67.7
2483 Female, age 94, right hemisphere 64.0
2287 Male, age 75, right hemisphere 60.7
Nucleus accumbens
nTPM: 69.3
2824 Male, age 61, right hemisphere 77.3
2732 Male, age 80, right hemisphere 72.9
1783 Male, age 74, unknown 72.5
1856 Female, age 91, right hemisphere 68.4
2391 Female, age 94, left hemisphere 67.8
1806 Female, age 85, left hemisphere 66.1
2698 Female, age 72, unknown 65.3
2286 Male, age 75, left hemisphere 64.4
Nucleus basalis of Meynert
nTPM: 72.8
2569 Male, age 61, both hemispheres 80.0
2393 Male, age 80, right hemisphere 72.5
2821 Male, age 75, both hemispheres 71.0
2484 Female, age 94, left hemisphere 67.9
Nucleus of the diagonal band
nTPM: 68.9
1979 Male, age 74, unknown 72.1
2029 Male, age 61, right hemisphere 71.9
2195 Female, age 85, both hemispheres 71.5
2775 Male, age 80, right hemisphere 67.6
1812 Female, age 91, both hemispheres 61.3
Olfactory tubercle
nTPM: 70.2
1998 Female, age 91, both hemispheres 72.6
2487 Female, age 94, left hemisphere 71.9
2856 Male, age 75, right hemisphere 71.6
1846 Male, age 80, right hemisphere 64.7
Putamen
nTPM: 71.1
2489 Female, age 72, unknown 77.5
1838 Male, age 80, right hemisphere 74.6
2647 Male, age 75, left hemisphere 73.8
2466 Female, age 79, unknown 71.0
1829 Male, age 74, unknown 69.7
1937 Female, age 91, right hemisphere 67.4
2482 Female, age 94, left hemisphere 63.4
Septal nuclei
nTPM: 70.3
2059 Female, age 85, both hemispheres 75.7
2199 Male, age 80, right hemisphere 74.8
2394 Male, age 61, left hemisphere 70.3
2009 Female, age 91, both hemispheres 69.6
2629 Female, age 94, right hemisphere 69.3
2031 Female, age 72, unknown 66.3
1960 Male, age 74, unknown 66.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.0
Samples: 246

Max nTPM: 126.7
Min nTPM: 3.4
Std nTPM: 18.0
Median nTPM: 35.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 126.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 112.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 89.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 85.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 83.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 80.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 80.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 79.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 78.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 78.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 76.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.0
Samples: 246

Max nTPM: 246.3
Min nTPM: 5.3
Std nTPM: 27.3
Median nTPM: 43.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 246.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 127.3
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 120.3
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 116.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 115.6
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 114.0
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 109.0
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 108.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 104.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 104.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 104.4
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Brain - Putamen (basal ganglia)
Average nTPM: 36.9
Samples: 205

Max nTPM: 105.9
Min nTPM: 6.6
Std nTPM: 17.6
Median nTPM: 33.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 105.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 104.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 97.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 90.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 83.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 83.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 79.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 76.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 76.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 72.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 72.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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